Triticum aestivum (bread wheat): 123187745
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Entry
123187745 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123187745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123187745
03041 Spliceosome [BR:
taes03041
]
123187745
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123187745
Spliceosome [BR:
taes03041
]
Complex B
Other components
Prp19-related factors
123187745
Complex C
123187745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
ARM_TT21
TPR_15
ARM_TT21_C
TPR_5
TPR_16
Motif
Other DBs
NCBI-GeneID:
123187745
NCBI-ProteinID:
XP_044455603
LinkDB
All DBs
Position
2A:92627673..92633070
Genome browser
AA seq
933 aa
AA seq
DB search
MPSAAAGPAEVALAPPAKAAALPFAGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHVRPHPISHPAYASLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRGRRNFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSFRVFRRYLQFDPSHAEDFIEFLVSAERWQEAADRLASVLNDDGFRSVKGKTRHQLWLE
LCDILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGV
SSVMTVQEFSVVFEAYTQFEQSMLAAKLEAAEEDGAAGSDEGEKGGKKNKVEKLEKELAA
CWLNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFDKDPAKQVATY
VEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKAVDHLATIWCE
WAEMELRNQHFDKAIELMRLATAEPSVEVKRRAAAEGDEPVQLKLHKSLKLWSIYVDLEE
SLGSLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKD
IWVTYLTKFVKRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNV
YDEAVRAVPNTEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDKDVMVMCMKFAEL
ERNLGEIDRSRAIYIHASNYADPNSHPEFWKKWNDFEIQHGNEDTFREMLRIKRTVAASR
SQTHFILPEYLMQRDQRLNMDEAVDTLTRAGVPQDEMAALERQLASGPSPAPAAAPSTST
TPANRMMNFVSAGVEARAESSTQQAAANNEDIELPDEESDEEDDVQIAERAVPEAVFGEL
GKRAAESREESSSAQENNEQQLGALERIKRRRQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggccgccgcgggtccggcggaggtggcgctggcgccgccggcgaaggcggcc
gcgctcccgttcgccgggatctcgccggacctctacccgacggaggacgacctgccctac
gaggaggagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtcgcc
cgcgcagccgcgcccttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctt
ccggggagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgtgcgcccg
cacccaatctcccacccggcctacgcctccctcaacaacaccttcgagcgggcgctcgcc
accatgcacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgc
ctgctcacccgcggccgccgcaacttcgaccgcgccctccgcgcgctgcccgtcacgcag
cacgatcgcatctggccgctctacctgcgcctcgcctcgctcccggcctgccccgtcgag
acgtccttccgcgtcttccggcgctacctccagttcgacccctcccacgccgaggacttc
attgagttcctcgtctcggccgaacgctggcaggaggcagccgaccgcctggcctccgtg
ctcaacgacgatggcttccgctctgtcaaggggaagaccaggcaccagctctggctcgag
ctctgcgatatcctcactaagcatgctgatgaggtcgcagggctcaaggtggatgccata
ctgcggggcgggatacgcaagttcaccgacgaggttggcaagttgtggacctcgctcgct
gattactatgtcaggaggaccctctatgagaaagcaagggacgtcttcgaggagggggtt
tcttcagtgatgacagtgcaggagttcagtgtggtgtttgaggcttatacacaatttgag
cagagtatgcttgcggcaaagctggaggcagctgaagaggatggggctgcggggagcgac
gagggtgagaaagggggcaagaagaataaggtggagaagctagagaaggaacttgcagcg
tgttggttgaatgatgaagatgacactgatttgaggctggcaaggtttgagcggctattg
gatcgcagaccagagctccttagcagtgtcctgttgagacagaatccacataatgtggag
gagtggcacaggagagttaaactttttgacaaggatcccgcaaagcaagtagcgacatat
gtcgaggctgtgaaaactgtggacccaatgaaggcagttgggaaacctcatactctatgg
gtggcatttgcaaagatgtatgagaaacataaccgcttagatagtgctgaagatatcttt
aaaaaggccacacaagtgaactataaagcagtggaccacttggctactatttggtgtgaa
tgggccgaaatggagctccgcaaccaacattttgacaaggcaattgagctgatgaggtta
gccacagcagagccctctgttgaggtgaagaggcgagctgctgcggagggtgacgagccg
gtccagctgaaattacataaatctctgaaattatggagtatctatgttgacctggaggag
agccttgggtcgttggaaacaacccgtgctgtttatgagagaatattagatttaagaatt
gccactcctcaaataattcttaattacgcatttcttcttgaggagaacaagtatttcgaa
gatgcatttaaagtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggat
atttgggtgacctacctcacaaagtttgtaaagcggtaccagcgaagcaagttagagcgg
gcaagagagctgttcacggaagctgtcgaaaaggctccgccgcacgaaaagaaggccttg
tatttgcaatatgctaaactggaggaagactacggcctcgcaaaacgtgccatgaatgta
tatgatgaagctgtaagggctgttcccaacactgaaaagatgagtatgtatgaaatatac
attgcacgtgctgctgaactttttggtgttccaaggaccagacaaatatacgagcaagct
atagaatctggtctcccagacaaagatgttatggtgatgtgcatgaagtttgcggaactt
gaaagaaatcttggagaaatcgaccgttcccgggctatttatatccacgcctccaactat
gctgatccaaattctcacccagagttctggaaaaaatggaacgactttgagatccaacat
ggtaatgaagatacattcagggagatgcttcgcatcaagcgtacagtggccgctagccgc
agtcagactcatttcatccttccggagtacctgatgcaaagggaccagaggctaaacatg
gatgaggcggtcgacactctgacgcgtgccggtgtcccgcaggatgagatggccgcctta
gaaaggcagctagcttctggaccatccccggcgccagcagcggctccaagcaccagtacg
actcctgcaaacagaatgatgaactttgttagtgccggagtagaggcacgggccgagagc
agcacgcaacaggctgctgctaacaacgaggacatcgagctgcccgacgaagagagcgac
gaggaggacgatgtccagatcgcggagcgggctgtccctgaagccgtgtttggcgagctc
ggcaagagagccgcagagagcagggaggaaagctctagtgctcaagagaacaacgagcaa
cagctgggtgctctcgagagaatcaagcgaaggcgtcaatag
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