Triticum aestivum (bread wheat): 123187841
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Entry
123187841 CDS
T07757
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123187841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123187841
03041 Spliceosome [BR:
taes03041
]
123187841
03009 Ribosome biogenesis [BR:
taes03009
]
123187841
03016 Transfer RNA biogenesis [BR:
taes03016
]
123187841
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123187841
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123187841
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123187841
Complex C
U4/U6.U5 tri-SnRNP related factors
123187841
Ribosome biogenesis [BR:
taes03009
]
Eukaryotic type
Pre-60S particles
Helicases
123187841
Transfer RNA biogenesis [BR:
taes03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123187841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ArAE_1_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
123187841
NCBI-ProteinID:
XP_044455736
LinkDB
All DBs
Position
2A:106589994..106597633
Genome browser
AA seq
1006 aa
AA seq
DB search
MEEVENSSKRKAPELSSEDNSSAAVLDEQQSLPGSTAKRPNLARSCIHEVAVPNGYDLSK
DEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAI
AMSFRDKQRVIYTSPLKALSNQKYRELTHEFSDVGLMTGDVTLQPNATCLVMTTEILRAM
LYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEW
ICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKHPS
QPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSM
SKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSGRAGR
RGMDARGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHV
IRNSFHQFQYEKALPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASSTLPPALSAPRNNYIVDTLL
HCSSSSSENGANGPRSKPCPPREGEKGEMHVVPVPLPLLSGLSSVRISIPTDLRPPEARQ
NILFAVQELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEEKLCSHPLNKSDQSEQ
QLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAA
CLIDTGDELLITELMFNGTFNELDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMMQLSE
AARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRL
VRRLDEFLNQLKAAAEAVGEVNLEKKFGLASESLRRGIMFANSLYL
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtggagaattccagcaagcgtaaggcacccgagctgagctcggaggacaat
tcctccgctgctgttctggatgagcagcagtcgctgcctggctcgactgccaagcgtccc
aacctcgcccggtcgtgcatccatgaggtcgcagtccccaacggctacgatttgtccaag
gatgaggccgtacacgggaccctttcaaaccctgcgtttaatggggagatggccaagaca
tacccgtttcagctcgaccccttccagagcatctccatcgcgtgcctggagcggaacgaa
tctgtcttggtctcggctcacacctctgctgggaagacggccatcgctgagtacgccatt
gcaatgtcgttcagagacaagcagagggtgatatacacctctccgttgaaggctcttagt
aatcagaagtacagggagcttactcacgagttctctgatgttggattgatgactggtgat
gtcacgcttcagccaaatgctacttgcctggtcatgacaacagaaatcctgagggcgatg
ctttataggggctccgaggtgatcaaggaagttggttgggttatatttgatgagatccac
tacatgaaggatcgtgagagaggcgttgtgtgggaagagagtatagttttcctgccccct
gccatcaagatggtcttcctttctgctaccatgtcaaatgcaaccgagttcgctgagtgg
atatgcaatctgcataagcagccttgtcacgtggtgtacacagacttcaggccaacaccg
ctacagcactatgtgttcccaataggtgggtctggtctctaccttgtagtggatgaaaat
ggtcagttcagggaggataattttctaaagctgcaagacacatttgcaaagcaccctagt
caaccagatgggaggaagggcggtgggcctaaagccagtggccgaattgcaaaaggtgga
aatgcttctggaacatctgacatatacagaattgtcaagatgattatggatcgcaagttt
caaccagttataattttcagctttagtagaagagaatgtgagcaccatgccatgtcgatg
tcaaaacttgatttcaacactcaggaagaaaaggataacatcgagcaggttttccgtagt
gctattttctgtttaagtgaggaagatagagggttacctgctatagagttgatgttgcct
cttcttaaacgaggtattgcagtacaccattctggactgcttccattaattaaagagctg
gtggaattgctcttccaagaaggtcttgtgaaagctctttttgctactgagacgtttgcc
atgggcctgaacatgcctgcaaaaacagttgtcttcacatctgtcaagaaatgggacggt
gatagtaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcga
cgtggcatggatgcacgtggtatttgtgttataatgattgatgagaagatggaaatgagt
gttatcaaggacatggtgttaggtaaaccagcacctctcatcagtacttttcgactgagc
tactacactattctgaatttactgagtcgtgcggagggccaatttaccgctgaacatgtg
atccggaattcattccaccagtttcagtatgaaaaggctttacctgaagtcgttcagaag
attacaaagttggaaaatgaagctacattgctggactcttctggagagaatgatcttgcc
gagtatcacaagttagggcttgatatatctgaacttgaaaagaaaatcatgtctgagatg
attagaccagagagagctttgttatatttggtccctggaaggctggttaaagtcagagat
ggctcaacagactgggggtggggtgtggtcgtaaatgttgtgaagaaacctccagcatct
agtactctcccccctgcattaagtgcacctcgcaataactatatagtggataccttgctt
cattgttcttcaagttcaagtgagaatggagccaatggaccacgttcaaagccatgccca
cctcgcgaaggggagaagggagaaatgcatgtggtgcctgtaccattacctttattatct
ggtctaagcagtgttagaatcagcattccaactgatctacgaccacctgaagcgagacaa
aacatactctttgcagttcaagaactaggaaaacgttacccccaagggcttccaaagcta
catccaattacggacatgggtattgaagaacctgaattagttgacttggttcataaactt
gatggtctcgaggagaaattatgttctcatcctcttaataagtctgatcaaagtgagcag
caactgtcatggtaccaaagaaaggctgaactgaatcatgaaattcaacaactaaagtca
aagatgcgggattcacagctgcaaaaatttagggatgaactaaagaaccggtctcgcgtt
ctgaagatgcttggtcacattgacacggatggtgttctccagctaaagggacgtgctgcc
tgtttaatagacactggggatgagctgcttatcactgaacttatgttcaacggtacattt
aatgaacttgatcaccatcaagttgcttctgttgttagctgctttgtaccgtgtgagaag
tcaagtgagcaaatacgcctgagaaatgagctttctaagccaatgatgcaactctcggag
gctgctagaaaaatagctgaggtacaacgagaatgcaaattggacgtaaatgtagaggaa
tacgttgaatcaacttgtaaaccctatctgatggatgtcatatactgctggtcaaagggc
gcgacctttggagaggtgatagaaatgactgacatttttgaaggaagcatcataaggcta
gttaggaggctggatgaatttctaaatcagctaaaagctgctgctgaagccgttggggag
gtaaaccttgagaagaagtttgggttggcgagcgagagcttgcgtcggggtatcatgttt
gccaactcattgtacctgtga
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