Thermosipho africanus: THA_1132
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Entry
THA_1132 CDS
T00797
Name
(GenBank) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
taf
Thermosipho africanus
Brite
KEGG Orthology (KO) [BR:
taf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
taf03016
]
THA_1132
Enzymes [BR:
taf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
THA_1132
Transfer RNA biogenesis [BR:
taf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
THA_1132
Prokaryotic type
tRNA splicing ligases
THA_1132
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ACJ75585
UniProt:
B7IHM1
LinkDB
All DBs
Position
complement(1155356..1156693)
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AA seq
445 aa
AA seq
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MYIHKIKKTGNMKVDAFVLTDNISEISEAIEQLKNVASLPTIVKAAYAMPDIHWGYGFPI
GGVAAFSNIISPGGVGFDINCGVRLLKTQIDYNDFKKYIENTIKELYDVIPVGVGATSKK
FDKKSFKKIIEEGAKRAIEMGCGLSEDLEYIEDFGSISPASMEDISKTAYERGREELGTL
GAGNHFIEIQKVEEIYDEKKANILGLYKNHIVIMIHTGSRGFGHQIATDYIKLMRNLHND
LPDKQLAYAYFDSDLGQKYYSAMNCAANYAFSNRQIITHYIRKVFSKFSKVEIVYDVAHN
IAKVEKHDNQKLIVHRKGATRAFGPYHPDIPEKYKSIGQPVLIPGNMGTASYVMVGTNEN
FAFSSTAHGAGRVLGRRQALKKLNLNQVLSNLQKRGIIVKSKSKKTILEEAPDAYKEIDR
VVEIVDKLNLSKKVAKLIPLGVIKG
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtatattcataaaataaaaaagaccggaaatatgaaagttgatgcttttgttttaacc
gacaacatatcagaaatatccgaagcaattgaacaacttaaaaacgtggcctctcttcca
actatagtgaaagccgcttatgcaatgcccgatattcattggggatatggatttccaatt
ggaggtgttgctgccttttctaacattataagccctggcggcgtaggatttgacattaac
tgtggagttagattgcttaaaacgcaaatagactataatgactttaaaaaatatatagag
aacactattaaagagctctacgatgtaatacccgttggagttggagcaacatcaaaaaaa
tttgataaaaaatcctttaaaaaaataatagaagaaggcgccaaaagagcaattgaaatg
ggatgtggactttctgaagatttagaatacattgaagattttggaagtatttctcctgca
agtatggaagatatctctaaaacagcatatgaaagaggcagggaagaactaggtacactt
ggtgcaggaaatcactttattgaaattcaaaaagttgaagaaatatatgatgagaaaaaa
gcaaatattttggggctttataaaaatcatatagtaataatgattcacacaggtagcaga
ggcttcggacaccaaattgcaactgattatataaagcttatgagaaatttacataacgac
cttccagacaaacaacttgcatacgcttattttgatagtgatctaggtcaaaaatattat
tctgcaatgaattgtgccgcaaattatgcattttctaatagacaaattattacccactac
ataagaaaagttttctccaaattttcaaaagttgaaatcgtgtacgatgttgcacacaat
attgcaaaggttgaaaaacacgacaatcaaaagttaatagtccatagaaaaggtgccaca
agagcttttggaccatatcatccagatattcctgaaaaatataaatctattgggcaacct
gttttaattcctggcaatatgggaactgcttcgtatgtaatggtaggaacaaacgaaaat
tttgcattctcatccacagcccacggagcagggagagttttaggcagaagacaagcttta
aaaaaacttaatttaaatcaagtactttcaaaccttcaaaaaagaggtataatagttaaa
agtaaatctaaaaaaacaatattagaagaggctccagatgcgtataaggaaatagacaga
gtggttgaaattgtagacaaattaaatctttctaaaaaagttgccaaattaattcctctg
ggggttattaaaggatga
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