Thermosipho africanus: THA_1319
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Entry
THA_1319 CDS
T00797
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
taf
Thermosipho africanus
Pathway
taf03030
DNA replication
taf03430
Mismatch repair
taf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
taf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THA_1319 (polC)
03430 Mismatch repair
THA_1319 (polC)
03440 Homologous recombination
THA_1319 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
taf03032
]
THA_1319 (polC)
03400 DNA repair and recombination proteins [BR:
taf03400
]
THA_1319 (polC)
Enzymes [BR:
taf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THA_1319 (polC)
DNA replication proteins [BR:
taf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
THA_1319 (polC)
DNA repair and recombination proteins [BR:
taf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
THA_1319 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
HHH_3
tRNA_anti-codon
DUF655
DEDDh_C
RNase_H_2
DNA_pol3_a_NI
NleF_casp_inhib
Zn_ribbon_8
YhfH
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ACJ75764
UniProt:
B7ICN7
LinkDB
All DBs
Position
1335327..1339424
Genome browser
AA seq
1365 aa
AA seq
DB search
MKYVFPNLNIPITKLSEYFNLELSGEIVKIVYDTKSQSLTFYLNEAIGDLDILSEKLKMF
FGVDVFLEYSLPEINKEKILNMLNGNAPYVKDVEFLENEIVIKAFGEFAAKKIESKLKRI
ESLTKKNVRVEIIEEEISFVPPKVESSLKTFEGGKIKYYFPSNISMNAKGVFLRGKVFKI
EKSEYGNPLLSIYVTDNKDSILAKVFDNVDKIETLVSVNNWYYFKGSMSVDRNGEFYFSV
KEIYEDPEPIERKDLSQEKRVPLHVHSKMSDLDAIIDIKEFVKRAKEWGWKAVAITDHGN
VQSIPYLYEEAKSNEIKPIFGTEMYFLNEPGDIVKNLDKDYVIKDCVYTVFDLETTGTNA
RFDEIIEFGAVKYKDGKIIDTFKSFVKPNKDINDFTQKLTGITNDMLKDAPGIEEVVPKF
LEFIEGTVLVAHNADFDYGFIREVYRKMYDKDLIMPYLDTLKLSKVILKGKVKSFGLGKL
VEYFKLGPFKHHRAFEDASVTAELFGKLVELLGKMGIKSLNDINKLKAGTSISSIRTKRV
FNHITILVKDKIGLKNLYKLVSDAHVKYFKYVPFVPKNVLKEYKEGLIFGTGCEQGEIFE
ALKGSATDEEIIELLKEYDYVEIFPLSTIVSVNKEQAKEIFKRLYFLAKRLKMPVVMVDN
AHYLEPEDIKARHVLLSPKEKSNPHDEDLRDKDAQLYLRTTDELLKEAIEIFGDEKIARE
VVIENPNKIADMIEDIAPVKKKLHPPIIDGAEENVRNLSLKRAKELYGDPLPEVIEKRLE
KELKSIIDNGYAVLYEIAHLIVKKANEDGYVVGSRGSVGSSFVAYLMGITEVNPLPPHYI
CPNCKYLEFSKEVGSGYDLPDKLCPKCGTKLNKTGQDIPFEVFMGFKGDKVPDIDLNFSG
EYQERAHNYIVELFGKDNVLRAGTISTIAERSAIGYVRSYMELKDETLNTAEQVRLAEKV
AGVKRTTGQHPGGLMIVPKDMTVYDFTPIQYPANKKDSEMCTTHFAYESIHDDLVKLDAL
GHDDPTMIKLLYEYTGVDPTTVPMDDKETLEIFSSLKPLKVRASDLGTDVGTIGIPEFGT
DFVQEMLKETRPKSFAELVRISGLSHGTDVWLNNAQDIIRSGKATLSEVISCRDDIMIYL
IKAGVEESTAFKIMENVRKGKGITKEEEDLMREHNVPEWFIESCKKIKYLFPKAHAVAYV
SMAFRIAYFKVHFPLAYYAAFFSIKGDEFSIETILKGPNAIKKRLTELSVKMKKDVKEKN
EEKVLEAALEMYLRGFSFLPPDILKSDYRRFLIEDNKLRIPLNRIPGVGDSVAYSIVQAR
EEKEFTSIEDLKKRTKLSKAHITTMKKLKILNNLPETDQSSLFDF
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgtttttccaaatttgaatatccctattacaaaactttcagaatattttaat
ctggaactttcaggtgagattgtaaaaattgtatatgatacaaaatctcaatcgcttact
ttttacttaaatgaagcgattggagatttagatattttaagtgagaagttgaaaatgttt
tttggagttgatgtgtttttagaatatagtttgcctgaaataaataaagagaaaatattg
aatatgcttaatggtaatgctccttatgtaaaagatgtggaatttcttgaaaatgaaata
gttattaaagcttttggtgaatttgcagctaagaaaatagaaagtaaattaaaaagaatt
gaaagtctaactaaaaagaatgttagagtagaaataattgaagaggaaataagctttgtt
cctccaaaagtagaaagttctttgaaaacatttgaaggtggaaaaataaaatattatttt
ccatcaaatatttcaatgaatgcaaaaggagttttcttaagaggaaaggtttttaaaatt
gaaaaatctgaatatgggaatccgctattaagtatatatgttacagataacaaagattcc
atacttgcgaaagtatttgataatgtagataaaatagagaccttggtttcagtaaataat
tggtattactttaagggttctatgagcgttgatagaaatggagagttttatttttctgtc
aaagaaatttacgaagatccagagccaattgagagaaaagatttatcacaagaaaagaga
gtgcctttgcatgttcattcgaaaatgagtgatttagatgcaattatagatataaaggaa
tttgtaaaaagagcaaaagaatggggttggaaggcagtagctataacggatcatggaaat
gtacaatctataccttatttatatgaagaagctaaatccaatgaaataaaacccatattt
ggaactgaaatgtactttcttaatgaacctggagatattgtaaagaatttagataaagat
tatgtgattaaggattgtgtttatacagtcttcgaccttgaaacaacaggtacaaacgca
cgattcgatgagataattgaatttggtgcagtaaagtacaaggatggaaaaattattgat
acctttaaaagctttgtaaagccaaacaaagatataaatgattttacccaaaagcttact
ggaataacaaatgatatgttaaaagatgctcctggtatagaagaagttgttccaaaattt
ttggaatttatagaaggtactgttcttgttgcacacaatgcagactttgactatggattt
attagggaagtttacaggaagatgtacgataaagatttgataatgccttatcttgataca
ttgaagctttcaaaggtaattttaaagggtaaggttaagtcttttggccttggaaaactt
gtggaatatttcaaacttggaccatttaagcatcacagggcttttgaagatgcaagtgtg
actgcagaactttttggtaaattagttgaattattaggtaagatgggtataaagagttta
aatgatataaataaactaaaagcaggtacttctatttcaagtataaggacaaagagagta
tttaatcacataactattttagttaaagacaaaataggactgaagaacttgtataaatta
gtttcagatgcacatgtaaaatattttaaatacgtgccatttgttccaaagaatgtttta
aaagaatataaagaagggttgatatttggtacaggctgtgagcagggcgaaatttttgaa
gcactaaagggttctgcaaccgatgaggaaataatagagcttttaaaagagtatgattat
gttgaaattttcccacttagcactattgtttcagtaaataaagaacaggcaaaggaaata
tttaaaaggctttattttcttgcaaaaaggttaaaaatgcccgttgtaatggttgataac
gctcattatttagaaccagaagatataaaggcaagacatgtcttactttcacctaaggaa
aaaagtaatccacatgatgaagatctacgcgataaagatgcacagctttatcttagaact
accgatgaattactaaaagaggcaatagaaatattcggagacgaaaaaattgctagagaa
gtagttattgaaaatccaaataaaattgcagatatgattgaagatattgcgccggtaaag
aaaaagctccatccaccaataattgatggtgcagaagagaatgttagaaatttatctcta
aagagagccaaagagctttatggtgatccacttccagaagttattgaaaaaaggcttgaa
aaggagcttaaaagtataattgataacggttatgcagttttgtatgaaattgcacatctt
atagtaaaaaaggcaaacgaagatggttatgttgttggttcaaggggttctgttggttct
tcatttgttgcataccttatgggtataacggaagttaatccacttccgccgcactatatt
tgtccaaactgcaaataccttgaattttctaaggaagttggttcaggttatgatttgcct
gataaattgtgtccaaaatgtggaacaaaattaaataaaacaggtcaagacattcctttt
gaagtttttatgggatttaaaggtgataaggttccggatatagatttgaacttttctggt
gaatatcaagaaagagcgcacaactatattgtagagttatttggaaaagataacgttctt
agggctggaacaatcagtacaattgccgagagaagtgcaattggctatgtgagaagttat
atggagttaaaagatgaaactttaaatacagctgaacaagtaagactggcagaaaaggtt
gctggggtaaaaagaacaacaggtcagcatcctggaggtctaatgatcgttccaaaggat
atgaccgtatatgattttactccaatacagtatcctgcaaacaagaaagattctgaaatg
tgtacaactcattttgcatatgaatcaatacatgatgatttggtaaaacttgatgcactc
gggcacgatgatcctacaatgattaaacttttatatgagtatacaggagtagatcccact
actgttcctatggatgataaagaaactttggaaattttttcgtcgttaaaacctttaaaa
gtaagagcttctgatttaggaacggatgttggtactattggtattcctgaatttggtacc
gattttgtccaggaaatgcttaaagaaacaaggccaaaatcatttgcagagcttgttaga
atttcagggctttcacacggtaccgatgtttggcttaataatgcacaagatataattagg
tccggaaaagcaacactttcagaagttatttcttgtcgtgatgacataatgatttacctt
ataaaagcaggggttgaagaatcaacggcctttaagataatggagaatgttagaaaagga
aaaggtattacaaaagaagaagaggatttgatgagagagcataatgtaccagaatggttt
atagaatcttgtaaaaagataaaatatcttttccctaaggctcatgctgttgcgtatgtt
agtatggcatttagaattgcttactttaaagttcattttccgcttgcatattatgcagcg
ttcttctccattaagggagatgaattttccattgaaacaattttaaaaggtccaaatgct
ataaaaaagagattaactgaacttagtgtaaaaatgaaaaaagatgtaaaggaaaagaac
gaagaaaaagtacttgaagcagctttagaaatgtatttaagaggtttttcatttttacca
cctgatatattaaagagtgattacagaaggtttttaattgaagataacaaactaaggatt
cctttaaacagaattccaggtgttggcgatagtgttgcatattcaattgttcaagcaaga
gaagaaaaagaatttacttcaatagaggatttgaaaaagagaacaaaattaagtaaagca
catataactactatgaaaaaattgaagatattaaataacttacctgaaacagaccaatca
tcgttatttgatttctaa
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