Thermosipho africanus: THA_1344
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Entry
THA_1344 CDS
T00797
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
taf
Thermosipho africanus
Pathway
taf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
taf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THA_1344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taf03021
]
THA_1344
03400 DNA repair and recombination proteins [BR:
taf03400
]
THA_1344
Enzymes [BR:
taf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THA_1344
Transcription machinery [BR:
taf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THA_1344
DNA repair and recombination proteins [BR:
taf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THA_1344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
RNase_PH_C
DegS
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ACJ75789
UniProt:
B7ICR2
LinkDB
All DBs
Position
complement(1363144..1368093)
Genome browser
AA seq
1649 aa
AA seq
DB search
MGSTFKREIAKVTVKVASPEVIRSWSSGEVKKPETINYRTFKPEKDGLFCEKIFGPTKDY
ECACGKYKGKKYEGTVCERCGVRVESKEARRRRMGHIDLVAPVVHVWYLKSSPSILSSLL
GIPAKELENVVYYGGKRIIEKILIVTDPKNTDFIKGSQLYQTEYEIYSQKLDFEVVPGVI
IKSPSTPVTSSISGEVKIRHEKTHTDREITWVDVRKISRAEHRLYTGMILNVKNGDKVNQ
GDEIVSEMQIDPIYAPFDGTVEIDEISESITVRPLSTSKDIPVTFSLPYGVKPTVSNGAK
VKKGDQLTNGTVLPAVVASVSGTISFGKDLNVRPREDGKYEVLKNGTLFVENVVEEKHYP
LFEGALIYVEDGQEINEGDVIADRFLFEDEYLTIDEFKIFEEHYPAMFTAESEVENDRPI
VVITKIDDEVSVETGLKIGDIITDDQYWAYRVLYGEKIEADSGAAAIKKLLQNLDLEKLK
AEIEAELKKVSKSSGRAKKLLRRLKIVKDLLKSETKPEWMVLEAIPVVPPDIRPMIQVEG
GRFATTDLNDLYRRVINRNNRLKKLYEMNSPEIIIKNEKRMLQEAVDSLIYNGRMGKAVT
DRNGRPLKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMAMELF
KPFVLAELLNKDDETSKTARKMKKAIIEKELPQAYEVLEEIIKGHPVLLNRAPTLHRMSL
QAFEPRLIEGNAIQLHPLVCPPFNADFDGDQMAVHVPLSAAAQAEAKFLMLSRYNIISPA
HGKPISMPGKDIVAGVYYLTMVDKNFDSVKEKDIKWKFSSIEEAGLAYEFGYIKLHDPIL
VKVDDKVIKTTYGRLIFASIVPDEFKDYNKTYGKGAIKDLVYNTFKKYGVDRTADLLDDI
KDLGFHYATISGLTVSITDFYISPEREKIIEQAKAKVSEIEELFAEGFLSDEERYRETIK
IWADATEKVQDATFEYIGKDPFNPIYIMVDSGARGNKDQLKQLAGMRGLMADPSGRTIEI
PIISNFREGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLVDVAQSVVVTTTDCGTH
NGVRATVLKSSDGLTVEKLEDFLFGRVLAKDVFDPKTNNVLVNPETGKQYTRDTIIDDDD
AKFLGNYSVRIPVVTEGEIDLSSPELPESYCELAEDFVYNDVHYEVGTEVNWDVVRKATS
AGLSKLKVKIYPVVGKVSVETVLSSKDSKQLVVDEELIEVTTAKILEENNVESVQVRPEI
IVRSVLTCEAEHGVCSKCYGMDLSNHQIVGVGESVGVVAAQSIGEPGTQLTMRTFHTGGI
ATTADITQGLPRAEELFEARKKLKEPEGVFSRVKGYVKDIVEDETGRKKVYIEDEAGDIH
EYEIPIKVKVAVNKGQKVLPGQSLSTGAIRPRKILETLDVDATALYLLKEIKKVYVEQGV
DIHDKHFEIIIKQMLDKVEVVDPGDTDYLPGDLVRLETVKRINKEILESNVQVDSNRKRV
IGKELHHHLIAEDENGQIVEIAKEGEEVTEEILEKAIKLGIKDLVVKNGEGEIVTYQILP
KEPIKYRRRLLRITKASLERVGWLSAASFQQTPQVLTEAAIEGAEDLLLGLKENVIVGQL
IPAGTGLDMFANIQIEETPRFAQEKEKMA
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaacttttaagagagaaattgcaaaagttactgtcaaagttgcctcacccgag
gtaattagaagctggtcaagcggcgaggtaaaaaagcctgaaaccatcaactatagaaca
ttcaaacctgaaaaagatggtcttttctgtgaaaaaatattcggtcctacaaaggactat
gaatgtgcttgtggaaaatataaaggcaaaaaatatgaaggaacagtttgtgaaagatgt
ggagtaagggtagagtcgaaagaagctagaagaagaagaatggggcatatagacttagtt
gcacctgttgtacatgtttggtatctaaaaagcagtccaagtattttatcttctcttctt
ggaatacctgcaaaggaacttgaaaatgttgtttactatggtggaaaaagaatcattgaa
aaaatattgattgtgacagatccaaaaaatacagactttataaaaggttcacaattgtac
caaacagaatatgagatatacagccaaaaattagactttgaggtagttccaggagttata
attaaatctccttcaactcctgtcacttcttctatctcaggtgaagtaaaaattagacac
gaaaaaactcatacagacagggaaataacctgggtagatgtaagaaaaatatcaagggca
gaacatagattatacaccggaatgattttaaatgttaaaaatggtgataaagtaaatcaa
ggtgatgaaatagtctcagaaatgcaaattgatccaatatatgctccattcgatggaaca
gttgaaatagatgaaatatcagaatcaattaccgtaagaccactttcaacaagcaaagat
attcctgttacattttctttaccatatggagttaaacctaccgtttcaaacggtgctaag
gtaaagaaaggcgaccaattaacaaatggaacagtacttccagcagttgtagcatctgta
agtggtactataagctttggtaaagatctcaatgtaaggccaagagaagatggaaaatat
gaagtgctcaaaaatggaactttattcgtagaaaatgttgtagaagaaaaacattatcca
ctctttgaaggtgcattgatatatgtagaagacggacaagaaattaatgaaggagacgta
attgccgacagattcttatttgaggatgaatatctaacaattgacgaatttaagatattt
gaagaacattatcctgcaatgtttactgcagaatctgaagtagaaaatgataggccaatc
gttgtcatcacaaaaattgacgatgaagtatccgttgaaacaggcttaaaaattggtgat
attataaccgatgaccaatattgggcatatagagttctctatggagaaaagattgaagca
gattcaggtgctgccgcaattaaaaagttacttcaaaacttagaccttgaaaaactaaag
gcagaaattgaagcagaactcaaaaaagtttcaaaaagcagtggtagagccaaaaaatta
ctaagaagactaaaaatagttaaagatcttctaaaaagcgaaacaaaaccagaatggatg
gttcttgaagcaatacctgttgttccacctgacataagaccaatgatacaggttgaaggt
ggaagatttgcaacaaccgaccttaatgacctctacagacgtgttattaacagaaacaat
aggctcaaaaagctatatgaaatgaactcaccagagataataataaagaatgaaaagaga
atgctccaagaagctgttgacagcttaatatacaacggaagaatgggtaaagcagtcaca
gatagaaatggaagaccattaaaatcattaaccgaccttttaaaaggtaaaaaaggaagg
tttagaagaaacttacttggtaaacgtgttgattactctggtcgtgcagttattgttgtt
ggtcctcatcttaaaattcacgaatgtggtcttccaaagaaaatggctatggaattattc
aagccatttgttcttgcagagcttttgaataaagacgatgaaacaagcaaaacagcaaga
aagatgaaaaaggcaataattgaaaaagaattgccacaagcatatgaagtacttgaagaa
ataataaaaggacatccagttcttttaaacagagctcctacattgcacaggatgtcgctt
caagcatttgaaccaagacttattgaaggtaacgcaatacagcttcatccattagtctgt
cctccatttaacgcggactttgacggtgaccaaatggcagttcacgtaccactttctgcc
gctgcacaagctgaagcaaagttcttaatgctttcaaggtacaatataatatcacctgca
catggaaagccaatttccatgccaggtaaagatatagttgcaggcgtttactatttaaca
atggtggataaaaactttgatagcgtaaaggaaaaagatataaaatggaaattctcttca
atagaagaggcaggacttgcatatgaatttggatacataaaacttcacgatccaattctt
gtaaaagttgatgataaagtaattaaaaccacatatggaagattaatctttgcaagtata
gttccagacgaatttaaagattacaacaaaacatatggcaaaggtgcaattaaagaccta
gtttacaatacattcaaaaaatacggtgttgacagaacagccgaccttcttgacgacata
aaagatcttggtttccactatgctacgatctcaggattgactgtaagtattacagacttt
tatatctctcctgaaagagagaaaattattgaacaagcaaaagcaaaagttagtgaaata
gaagaattatttgcagaaggattcttatcagatgaagaaagatacagagaaactattaaa
atttgggctgatgctactgaaaaagttcaagatgcaacatttgaatatataggaaaagat
ccatttaacccaatttacataatggttgattccggtgctaggggtaataaagaccagcta
aaacaacttgcaggtatgcgtggtctaatggctgacccatctggaagaactattgaaatc
ccaattatttcaaactttagagaaggattatcagtgcttgaattctttatcagtacacac
ggtgcaagaaaaggttcggcagataccgcacttagaacaagctctgctggataccttaca
agaagacttgtagatgttgcacaatctgtagttgttacaacaaccgactgtggcacacac
aacggtgttagagcaactgttctaaagagcagcgatggtttaactgttgaaaaacttgaa
gacttcttattcggtagggtccttgcaaaagatgtatttgatccaaaaacaaataatgtt
cttgtaaatcccgaaacaggcaagcaatatacaagagatactataatcgatgatgatgat
gccaagttcttaggaaattattctgtaagaattccagtagtaactgaaggcgaaattgat
ctaagtagtcccgaacttccagaaagctattgcgaacttgcagaagatttcgtatataat
gacgtacactacgaagttggtacagaagtaaactgggatgtagttagaaaagcaacgtct
gcaggactttcaaagttgaaagtaaagatatatccagtcgttggaaaagtatctgttgag
actgtattaagtagtaaagattccaaacaacttgttgttgatgaagaattaatcgaagtt
acaaccgcaaaaatccttgaagaaaataatgtagaatcagtacaagtaagaccagaaatc
atagttagatcggttcttacttgtgaagcagagcacggcgtatgttcaaaatgttatggt
atggacctttcaaatcaccagattgttggtgttggcgaatcagtaggtgttgttgctgca
caatcaattggtgaaccaggtacgcagctaacaatgagaacattccacacaggtggtatc
gcaacaacagcagacattacccaaggtcttccaagagccgaagaattgtttgaagcaaga
aagaaacttaaagaacctgaaggcgtcttctcaagagtaaagggctatgtaaaagatata
gttgaagatgaaactggtcgaaagaaagtttacatagaagatgaagccggtgacattcat
gaatacgaaattccgattaaagttaaagttgcagttaataagggacaaaaggtacttcca
ggacaatcattatcaactggtgcaattagaccaagaaagattcttgaaacactcgatgtt
gatgccactgcattgtacctattaaaggaaatcaagaaagtttacgtagaacaaggtgtt
gatattcacgataaacactttgaaataataataaaacagatgcttgataaagttgaagta
gtagatccaggtgatactgattatctacccggtgatttggtaagacttgaaacagtaaaa
aggattaataaagaaattctagaatctaacgtacaagttgattcaaacagaaaacgtgtt
ataggaaaagaattacatcaccatctgatagcagaagatgaaaacggacaaatagtagaa
attgcaaaagagggtgaagaagtaacagaagaaattttagaaaaagctataaaacttgga
attaaagacctagtagtgaaaaacggtgagggagaaattgttacatatcaaattcttcca
aaagaaccaattaaatacagaagaagattgctcagaattaccaaggcatcacttgaacgt
gttggctggctaagtgcagcaagtttccaacaaacaccacaagttcttaccgaagcagct
attgaaggagcagaagatctattacttggtttaaaagaaaacgtcattgtcggacaattg
ataccagcaggaacaggtcttgatatgttcgcaaacattcaaatagaagaaactccaaga
tttgcgcaagaaaaagaaaaaatggcttaa
DBGET
integrated database retrieval system
