Thermosipho africanus: THA_1709
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Entry
THA_1709 CDS
T00797
Name
(GenBank) rho transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
taf
Thermosipho africanus
Pathway
taf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THA_1709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taf03021
]
THA_1709
03019 Messenger RNA biogenesis [BR:
taf03019
]
THA_1709
Transcription machinery [BR:
taf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
THA_1709
Messenger RNA biogenesis [BR:
taf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THA_1709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
NACHT
Motif
Other DBs
NCBI-ProteinID:
ACJ76145
UniProt:
B7IDR8
LinkDB
All DBs
Position
complement(1710533..1711798)
Genome browser
AA seq
421 aa
AA seq
DB search
MSNNDAYNIKDLESMTIRDLYKLAKEYDIPRYTSLKKQDLIFAILEARAQSEGYFFGEGV
LEVHPDGFGFLRSLESMLPSSKDIYISNSQIRKFNLNTGDIISGVIRPPKEGERFLPMIK
IEAVNYKDPEFANERVNFENLTACYPDKQFFLETNKDTYSTRLIDLFSPIGKGQRGMIVA
PPKAGKTTILKEIANGIAKNHPDTIRIVLLIDERPEEVTDIKESVNAWVIAAPFDMPPDK
QIKKAELTLEMAKRLVEFGYDVVILMDSLTRLARVYNINVPPSGKLLSGGVDPAALYKPK
HFFGAARNTKEGGSLTIIATSLIETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAI
NIMLSGTRREELLLSNEKLKKLWLLRKMLSSMSEEEGLKLILNKMKETNTNEDFLALIDL
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaataatgatgcttataacataaaagatttagaaagcatgacaataagagatttg
tacaaactcgctaaagaatatgatattcccagatacacctctttaaaaaaacaggattta
atatttgcaatcttagaagcaagggcccaatcagaaggatacttttttggagaaggtgtt
ttagaagtacaccctgatgggtttggctttttaagaagtctagaaagtatgttaccaagc
tccaaagatatatacatctcaaattctcaaataagaaaattcaacctaaataccggtgat
attatatctggtgtaattagacccccaaaagaaggcgaaagatttttgccaatgataaaa
attgaggcggtaaattataaagacccagagtttgcaaacgaaagagttaattttgaaaat
ttaacagcatgctatcctgacaaacaatttttcttagaaacaaacaaagatacatactct
acaagattaattgatttattttccccaataggcaaaggacaaagaggtatgatagttgct
ccaccaaaagctggaaaaacgactattttaaaagaaattgcaaatggaattgcaaaaaat
catccagatacaataagaatagttcttttaatagatgaaaggccagaagaagtaacagat
ataaaggagtcagttaatgcatgggtaattgctgcaccttttgatatgccacctgataaa
caaattaaaaaagcagaacttacacttgaaatggcaaaaagacttgtggaatttggctac
gatgttgttattttaatggacagtctgacaaggcttgcaagggtgtataatataaatgtt
ccaccaagtggtaaacttctttctggtggtgtagatcctgcagcgctttacaaacccaaa
cacttttttggagcagctcgtaatacaaaagaaggtggaagtttgacaataattgcaact
tctttgatcgaaacggggtcaaaaatggatgaagtaattttcgaagagtttaaaggaact
ggaaatatggaactcgttctctcaagacaacttgctaataaaaggattttccctgcaatc
aatattatgttatctggaacaaggagagaagagttactacttagcaatgaaaaattaaaa
aagttgtggcttttaagaaaaatgttgtcttcaatgagtgaagaagagggattaaagctt
atcctcaataaaatgaaagaaacaaacacaaatgaagattttcttgcattaattgatctt
caatag
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