Thermococcus aggregans: NF865_04100
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Entry
NF865_04100 CDS
T10933
Symbol
rrp41
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
tagg Thermococcus aggregans
Pathway
tagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF865_04100 (rrp41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tagg03019
]
NF865_04100 (rrp41)
Messenger RNA biogenesis [BR:
tagg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NF865_04100 (rrp41)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NF865_04100 (rrp41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Pinin_SDK_N
Motif
Other DBs
NCBI-ProteinID:
USS41377
UniProt:
A0A9E7MZ08
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All DBs
Position
complement(714136..714879)
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AA seq
247 aa
AA seq
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MMGKPEGLKLIDENGKRLDGRKKYELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPR
EIHPKHLQKPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPR
TSIDVFIEVLQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEED
NYGEADVPVAIMPIKNDITLLQMDGYLTKEEFLEAVRLAIKGAKAVYQKQREALKEKYLK
IAEEVGE
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaaagcctgagggactcaagcttattgatgagaacggcaaaaggcttgatgga
agaaagaagtacgagctgaggccaattaaaatggaagttggagttttgaagagtgcagat
ggttctgcatatgtagaatggggtaagaataaaattttagcagcagtttatgggcctagg
gagattcatccaaaacaccttcaaaaacctgacagggcaattttgagagttagatacaat
atggcaccctttagtgttgaggaaaggaaaaaacctggcccagataggaggagtgttgag
ataagcaaagttattagaggggcccttgaaccggctgttattcttgagctctttccaaga
acttccatagatgtattcatagaggtgctccaagccgatgcaggcacaagggtggctgga
attacagcagcatctcttgctttggcagacgctggaattcccatgaaagaccttgttgca
gcgtgtgccgctggaaagatagatggagaaatcgtccttgacctaaacaaagaagaggac
aactatggagaagccgatgttccagtggctataatgccaatcaagaacgatataacattg
ctccagatggacggatacctaaccaaagaggaattcctcgaagcggtaagactggcaata
aagggagctaaggcagtgtatcaaaaacagagagaggcgttgaaggagaagtatctcaag
atagcggaagaggtaggtgagtaa
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