Thermococcus aggregans: NF865_04945
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Entry
NF865_04945 CDS
T10933
Name
(GenBank) intein-containing RctB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tagg Thermococcus aggregans
Brite
KEGG Orthology (KO) [BR:
tagg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tagg03016
]
NF865_04945
Enzymes [BR:
tagg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NF865_04945
Transfer RNA biogenesis [BR:
tagg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NF865_04945
Prokaryotic type
tRNA splicing ligases
NF865_04945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
LAGLIDADG_WhiA
Motif
Other DBs
NCBI-ProteinID:
USS41514
UniProt:
A0A9E7SPH9
LinkDB
All DBs
Position
864756..867641
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AA seq
961 aa
AA seq
DB search
MQIPLKRIDKIRWEIPKFDKRMRVPGRVYADDVLIQKMREDRTLEQAANVAMLPGIYKYS
IVMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDVNCLAPGSKLLTEHGYWVRVEEMPE
KFKLQGVRVYDIDEGHNDFSEVAFVAEREVEENELAVRIITESGRVIEGSEDHPVLTPQG
YVYLGNIREGDEVLVYPFEGVEFEERRGVLLSEEDFEGEDEQVVKFLKERKLLPLRWEDP
RIGTLARILGFAFGDGHLGEMDGRLYLSFYGKEKTLRELKKDLERLGVNSNLYVRERDYR
IETVSGEYEGRSVSAELRVTSRSFALLMEKLGMPRGRKAEKAYGVPEWVKRAPLWVKRNF
LAGLFAADGSIVEFKGNTPLPINLTQSKAEELEENLKAFMDEIAELLAEFGIKTTVYRVK
SKKGVTYRLALVGEESIKNFLGRINYEYDIEKKSKGLIAYAYLKFKECVKEARKKAAKTA
REVYMETGSVTKGHKAVKDIVNKRFVERTIYEGNREPRVPKDFPTFEEFARKNGYEGGFV
AERVIRIERVKPSYERFYDIGVYHSAHNFIANGVVVHNCGVRLIRTNLTENEVRPKIKQL
VDTLFKNVPSGLGSKGRIRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEENGRMEGAN
PDAVSQKAKQRGAPQLGSLGSGNHFLEVQVVDKIFNEQIAKVYGLFEGQVVVMVHTGSRG
LGHQVASDYLRIMEKANRKYNVPWPDRELVSVPFQTEEGQRYFSAMKAAANFAWANRQMI
THWVRESFEEVFRQKAEDLEMSVIYDVAHNIAKVEEHEVDGKKVTVVVHRKGATRAFPAG
HEAVPRAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGSTCHGAGRVLSRHAATRRFR
GDKLRNELMQKGIYIRAASMRVVAEEAPGAYKNVDNVVNVVHEAGIATLVARMRPIGVAK
G
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcccattaaaaagaatagacaaaattaggtgggaaatcccaaagttcgataag
agaatgagagtcccaggaagagtttatgcagatgatgtgctaatccaaaaaatgagagaa
gatagaaccttggagcaggcagccaatgttgccatgctgccaggaatctataagtattct
attgtcatgcctgatggtcaccaaggttatggtttcccaattggcggcgtagcggctttt
gacgtgaaagaaggtgtcataagccccggaggcgtcggatatgacgtgaactgccttgcc
cctggctcaaaactcctcacggagcacggatactgggttagagtcgaggaaatgcccgag
aagttcaagctccaaggtgttagggtctacgacattgatgagggacacaacgatttctcc
gaagtggccttcgttgccgagagagaagtagaggagaacgagctcgcggtcagaatcatc
accgaatctgggagggtcatcgagggtagcgaggaccatcctgttttaactccgcagggc
tacgtctacctcggcaacattcgagagggcgacgaggttctggtctatcccttcgagggc
gtcgagttcgaggagagaaggggcgttctcctgagcgaggaggactttgagggcgaagac
gagcaggtagtgaagttcctgaaggaaagaaagctcttgcccctccgctgggaagacccg
aggataggaaccctcgcgagaatcctcggctttgctttcggcgacggccacctcggtgag
atggacggcaggctctacctgagcttctacggaaaggagaaaacgctgagggagctcaag
aaagaccttgaaaggctaggcgtaaactccaacctctacgtgcgagagagagactaccgc
attgaaacggtgagcggtgagtacgagggcagaagcgtctcggcagagctgagggtcacc
tcaaggagcttcgccctgctcatggagaagctcgggatgccgaggggcagaaaggctgag
aaggcatacggcgtcccagagtgggtcaaaagggctccactctgggtgaagcggaacttc
cttgcaggactcttcgcggcggacggaagcatcgtagagttcaaaggtaacaccccactg
ccgataaacctcactcaatcaaaagctgaggaacttgaggagaacctcaaagctttcatg
gacgagatagcggaactcctggcggagtttggtattaagacgacggtttacagggtgaag
tcaaagaagggcgttacctacaggctcgccctagtcggggaggagagcatcaagaacttc
ctcggaagaataaactacgagtacgacattgagaagaaaagcaaaggcttaatcgcctac
gcttacctgaagttcaaggagtgcgttaaggaagcgaggaagaaagccgccaagaccgca
agagaagtttacatggagacgggaagcgtgacaaagggacacaaggccgtcaaagatatt
gtaaacaaacgtttcgtcgaaaggaccatttacgaagggaacagagaaccgcgcgttccg
aaggacttcccgacctttgaggagttcgcaaggaaaaatggctatgaaggtggctttgtc
gccgagcgtgtcatcaggatcgagagagttaaaccgagctatgaaaggttctacgacatc
ggcgtttaccacagtgcccacaatttcatagccaatggggtagttgtccacaactgtggt
gtccgccttatccgcacaaacttaacggagaatgaagttagaccaaaaatcaaacagctc
gtggacactctcttcaagaacgttccaagtggacttggaagcaaaggaaggattaggctc
cactggactcagcttgatgacgtcttggcagatggtgccaaatgggctgttgacaacggc
tacggctggaaagaagatttagagcacttagaagaaaacgggagaatggaaggtgcgaat
ccagatgcagtaagccaaaaagcaaagcaaagaggggctccacaattgggatctttagga
agtggaaaccacttcttggaggtacaggtggttgataaaatctttaatgagcaaattgcc
aaggtatatggcctattcgaaggacaagttgtggttatggtgcatacaggttcgagaggc
cttgggcaccaggtggcaagcgactacttgaggattatggaaaaagctaacagaaaatac
aacgtaccatggcctgacagagaactcgtaagcgttccattccaaacggaagaaggtcaa
agatacttcagtgcaatgaaagctgcagcaaacttcgcatgggccaacaggcagatgatt
actcattgggtaagggaaagctttgaagaggtcttcagacaaaaagccgaggacttggag
atgagcgttatttacgacgttgcccacaacatagccaaagttgaagagcacgaggttgat
ggaaagaaagtcacggttgtagtacacagaaaaggtgccacaagggcattcccagcagga
catgaagcagtgcccagagcctaccgcgatgttggccaaccagttctcattcccggttcg
atgggtacggcaagctacgtgcttgctggcgctgaggggtcgatgaaagaaacctttggt
agcacatgccacggtgctggaagagttttgagcagacatgcagcaacgagacggtttaga
ggagacaaacttagaaacgagctcatgcagaagggaatctacatcagggcagcaagcatg
agagttgtagcagaggaagctccaggagcttacaagaacgtcgacaacgttgttaacgtt
gtgcatgaagcgggaatagcgaccctagtagcaaggatgaggcctatcggagttgcaaaa
ggttga
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