Candidatus Nitrosotenuis cloacae: SU86_003885
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Entry
SU86_003885 CDS
T03883
Name
(GenBank) RNA-binding protein
KO
K12589
exosome complex component RRP42
Organism
tah
Candidatus Nitrosotenuis cloacae
Pathway
tah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SU86_003885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tah03019
]
SU86_003885
Messenger RNA biogenesis [BR:
tah03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SU86_003885
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
SU86_003885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AJZ75650
UniProt:
A0A3G1B0K0
LinkDB
All DBs
Position
complement(1211013..1211822)
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AA seq
269 aa
AA seq
DB search
MTAPILDDLKKKKILALLKDGQRIDGRALDEPRALTVDTGVIPKAEGSARVRLGDTEVVC
GVKIQPDKPFPDLGDRGIFICTAEILPLADPSAEPGPPGEEVIELARVVDRGIRESGMID
LKQLVLEKDKSVVGIFVDNSVTDYDGNLFDACSYASVASILSCKIPKWEYKDGTITKIDG
VLSDPPITTVPVSVTMGKIGDKILVDPNADEWKCMDARMTITTNADGNICAVQKGGSDGF
TPEQLVKCAQLSISTGAKIRDMLKQAGRS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaccaatactagatgatctaaaaaagaaaaagattcttgcattgctcaaagac
ggacaacgaatcgacggcagagcactagatgagccacgagcactaacagttgacaccgga
gtcataccaaaggcagagggttctgcacgagtacgactgggtgatactgaggtagtatgt
ggtgtaaagattcagccagacaagccgtttccagatttgggtgatagaggaatattcatc
tgtactgcagaaattttaccactggcagacccaagcgcagagcctggaccaccaggagaa
gaagtaattgagcttgcacgagtagttgataggggaattagagaaagtgggatgatcgat
ctaaaacaacttgtcctagaaaaagacaaatctgtagttggaatctttgttgataattct
gtgactgattatgatggcaatttgtttgatgcatgctcatatgcatcagttgcaagcatt
ctgtcctgtaaaattccaaaatgggaatacaaggacggcacaatcacaaaaatagacggt
gtactatccgacccaccaataactacagttccggtttctgttacaatgggaaaaattggc
gataaaatcctagttgatccaaacgcagacgaatggaaatgcatggatgccagaatgacc
ataactacaaatgcggatggaaacatttgcgcagtccaaaagggcggaagcgatggattc
actccagagcaactagtcaagtgcgctcaactctctatttcaaccggagcaaaaataagg
gacatgctaaaacaggcaggtagaagttaa
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