Candidatus Nitrosotenuis cloacae: SU86_003895
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Entry
SU86_003895 CDS
T03883
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
tah
Candidatus Nitrosotenuis cloacae
Pathway
tah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SU86_003895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tah03019
]
SU86_003895
Messenger RNA biogenesis [BR:
tah03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SU86_003895
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SU86_003895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
ECR1_N_2
KH_6
RRP40_S1
KH_2
RRP4_S1
KH-I_KHDC4-BBP
KH_KhpA-B
ECR1_N
Motif
Other DBs
NCBI-ProteinID:
AJZ75652
UniProt:
A0A3G1B0L1
LinkDB
All DBs
Position
complement(1212556..1213236)
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AA seq
226 aa
AA seq
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MDDIKRKYVIPGDVITTGPYRAEENVHLFGDKIIATTVGISEIFDSGVRVIPLTGMYIPR
IDDFIIGIVKSHTSLSWELNINSCYAGILPAADVFGRDFNPKVDDLTSRLKTGDLIAARV
ANSDRSRDPLITISDRDLGKIEDGELIKISPSKVPRLIGKRGSMIQTIEGATKAIITIGQ
NGFVVVSCDEPEGLLKAIEAIKMVEEQAHVPNLTEKIQQMLGSNSE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggatgatattaaaagaaaatatgtcatacctggcgatgtaatcacaaccggcccatat
cgagcagaagaaaacgttcacctctttggcgataaaatcatagctacaactgttggcatt
tctgaaatatttgatagcggcgttcgcgtaattcctttgactggaatgtacattccaaga
attgatgatttcattattggtatagtaaaatctcatacctcattatcatgggaactcaac
atcaactcttgttatgctggtatcttgccagcagcagatgtttttgggcgcgactttaac
cccaaagtcgatgatctcacatcccgactaaagacaggggatctgattgcagcacgagtt
gcaaactctgatagatcacgtgacccgctaatcacaatatctgacagggatttgggaaaa
atcgaagatggtgagctgataaaaatttcaccaagcaaagttccaagactgattggaaag
cgtggatctatgattcaaacaatcgaaggtgcaacaaaagcaatcattacaattggacag
aatggttttgtcgtagtgtcctgcgacgagccagagggattattaaaggccatagaagca
atcaaaatggtcgaggaacaagcacacgttccaaatttgactgaaaaaatacaacaaatg
ttaggatcaaacagtgaataa
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