KEGG   Candidatus Nitrosotenuis cloacae: SU86_003895
Entry
SU86_003895       CDS       T03883                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
tah  Candidatus Nitrosotenuis cloacae
Pathway
tah03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tah00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SU86_003895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tah03019]
    SU86_003895
Messenger RNA biogenesis [BR:tah03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SU86_003895
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SU86_003895
SSDB
Motif
Pfam: KH_1 ECR1_N_2 KH_6 RRP40_S1 KH_2 RRP4_S1 KH-I_KHDC4-BBP KH_KhpA-B ECR1_N
Other DBs
NCBI-ProteinID: AJZ75652
UniProt: A0A3G1B0L1
LinkDB
Position
complement(1212556..1213236)
AA seq 226 aa
MDDIKRKYVIPGDVITTGPYRAEENVHLFGDKIIATTVGISEIFDSGVRVIPLTGMYIPR
IDDFIIGIVKSHTSLSWELNINSCYAGILPAADVFGRDFNPKVDDLTSRLKTGDLIAARV
ANSDRSRDPLITISDRDLGKIEDGELIKISPSKVPRLIGKRGSMIQTIEGATKAIITIGQ
NGFVVVSCDEPEGLLKAIEAIKMVEEQAHVPNLTEKIQQMLGSNSE
NT seq 681 nt   +upstreamnt  +downstreamnt
atggatgatattaaaagaaaatatgtcatacctggcgatgtaatcacaaccggcccatat
cgagcagaagaaaacgttcacctctttggcgataaaatcatagctacaactgttggcatt
tctgaaatatttgatagcggcgttcgcgtaattcctttgactggaatgtacattccaaga
attgatgatttcattattggtatagtaaaatctcatacctcattatcatgggaactcaac
atcaactcttgttatgctggtatcttgccagcagcagatgtttttgggcgcgactttaac
cccaaagtcgatgatctcacatcccgactaaagacaggggatctgattgcagcacgagtt
gcaaactctgatagatcacgtgacccgctaatcacaatatctgacagggatttgggaaaa
atcgaagatggtgagctgataaaaatttcaccaagcaaagttccaagactgattggaaag
cgtggatctatgattcaaacaatcgaaggtgcaacaaaagcaatcattacaattggacag
aatggttttgtcgtagtgtcctgcgacgagccagagggattattaaaggccatagaagca
atcaaaatggtcgaggaacaagcacacgttccaaatttgactgaaaaaatacaacaaatg
ttaggatcaaacagtgaataa

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