KEGG   Candidatus Nitrosotenuis cloacae: SU86_004640
Entry
SU86_004640       CDS       T03883                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
tah  Candidatus Nitrosotenuis cloacae
Pathway
tah03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tah00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SU86_004640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tah03019]
    SU86_004640
Messenger RNA biogenesis [BR:tah03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SU86_004640
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SU86_004640
SSDB
Motif
Pfam: ECR1_N NB Prok-RING_1 Cas12f1-like_TNB Zf_1st_IFT121
Other DBs
NCBI-ProteinID: AJZ75773
UniProt: A0A3G1B4B6
LinkDB
Position
1353354..1353899
AA seq 181 aa
MNDFVMPGEKLGFIEEIEGGSNTFDDGDTIRASSAGIAEVDKKTKIVQVRNGRQLSIPKK
GDIVIGTVAMMLPSMIAVAIHYLNGKPNSSGVECICQNPDRKRIIARMNDVVALKIETHL
NGAIHATIDEPELGVLFTKCNVCAGNVVPMRDRIKCPNCGFMEDRKISTNYEKADFIKLR
E
NT seq 546 nt   +upstreamnt  +downstreamnt
atgaatgattttgttatgcctggtgaaaagctgggatttattgaagaaattgaaggtggt
tccaacacgtttgatgacggagatactatcagagcatcttctgcaggaattgcagaggtg
gacaaaaagaccaaaatcgttcaagtcagaaatggaagacagttatccatcccaaaaaaa
ggagacattgtgataggcaccgttgctatgatgctcccatccatgattgcggttgcaata
cactatctaaatggcaagccaaattcatctggagtcgagtgcatttgccaaaacccagac
agaaaaagaatcattgctagaatgaacgatgttgttgcactaaaaattgagactcacctt
aatggtgcaattcatgctacaatagatgagcccgagcttggcgttttatttacaaaatgt
aatgtttgtgctggaaatgtagttcccatgcgagacagaataaagtgtccaaactgtggg
tttatggaagacaggaaaatttctaccaactacgaaaaggcagatttcataaaactacga
gagtaa

DBGET integrated database retrieval system