Terribacillus aidingensis: KS242_14570
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Entry
KS242_14570 CDS
T07391
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
taid
Terribacillus aidingensis
Pathway
taid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
taid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KS242_14570 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
taid03400
]
KS242_14570 (ligD)
Enzymes [BR:
taid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KS242_14570 (ligD)
DNA repair and recombination proteins [BR:
taid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KS242_14570 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DUF6565
Motif
Other DBs
NCBI-ProteinID:
QXE01200
LinkDB
All DBs
Position
2797099..2798883
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AA seq
594 aa
AA seq
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MQVMKPIYRDTYPVGEEWIYEVKYDGFRAVLSVTDDHIRLTSKNGVDLTAQFPEVISFCK
QQKPLVHKHIPFSIDGELIIPKNKLSGDFGMLQTRGRMKAADRIQQMASKRPAVFMAFDL
LIDSGKKQEKRRLSSRKQALRELIALFRVHAPAIHFVDYSLDPEALFHDVVLHQGEGIIA
KRSVSTYKAGKQHHDWYKIKNWRTITAVLTAYDTENDYFHAQLSAGEGMVVPIGKCKHGL
EDKERNTLTAFFKENGKSANNLLTLPPAVCAKIHCLGQADEELREPRFQGLSPQTAASDC
TVQQAILDLAQFPQSVELSKLDKLYWEQASIEKLSYLLYIRKVAPFMLPHMVNRELTVIR
CPDGVEADFFYQKHRPDYAPDFIPATKTLQCLDLQSLIWYANHGSIEFHAPFHYIGADYP
CEIAIDLDPPTDDALPLAIKAANLLKEWLDQMELHPFIKTSGSSGLQLFIPLPERQLSYE
QAGTFTEALARLLVQQHPDLFTIERMKKNRHERLYIDYVQFGKGKTLPVPYTARKRSAGT
VSAPLFWEEVKEGLSLRDFTIETMPERIRQKGCPFTSYEEVRNSQKLDSILELV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgatgaagccaatttaccgagacacctatcctgttggcgaggaatggatttat
gaagtgaagtatgatgggtttcgagccgtgttatcggtgacagatgatcatattcgactg
actagtaaaaatggtgttgacttaactgcacagtttccagaagtgatttcgttctgtaag
cagcaaaaaccactcgttcataaacatatccctttctccattgacggggaattaataata
ccgaaaaacaaacttagtggtgatttcggtatgctacagacacgaggaagaatgaaagca
gcagaccggatccagcaaatggcatccaaacgccctgctgttttcatggcatttgattta
ctaatcgacagcggaaaaaagcaagaaaagcgccgactgtcttcacgaaaacaagcactt
cgggaactaatagcgcttttccgtgtgcacgcacccgctatccattttgttgactattca
cttgatccggaagcattatttcatgatgttgtgctgcatcaaggagaaggtataatagcg
aaacggtctgtgagtacgtacaaagctggaaaacaacatcatgactggtacaagatcaaa
aattggcgaaccattacagccgtcctgacagcttacgatacggaaaatgactatttccat
gcccagctgtcagctggtgaaggaatggtcgtaccaattggtaaatgtaagcatggtctt
gaagataaagaacggaacacactgaccgcgtttttcaaagaaaacggaaaatcagcgaac
aacctcctcacgcttccgccagcggtctgcgctaaaattcattgtttaggacaggcagat
gaagaattacgtgagccccgttttcaaggcttgtccccgcaaacagctgcttctgactgt
accgttcagcaagcaattttagacttggcacaatttccgcagtcggtggaattaagtaag
ctggataagctatattgggagcaagcaagcattgagaagctaagttaccttttgtatatc
cgaaaagttgctccttttatgcttcctcatatggtaaatcgagagctgaccgttatccgc
tgcccagacggcgtagaagcagattttttttatcaaaagcacaggccggattacgctcca
gacttcattcctgctaccaagaccttgcagtgcctcgatttgcagagtttaatttggtac
gccaatcatggcagcattgaatttcatgcaccttttcattacattggtgctgactatcca
tgcgagattgcgatcgacttggacccgcctactgatgatgcacttccattggctattaag
gctgccaatttactgaaagagtggcttgatcaaatggaactgcatccatttattaaaacg
tcaggcagcagcggactgcagctgtttatcccgctgcctgaaagacagctctcttatgag
caggcaggcacttttaccgaagcattggccagattacttgtacagcagcatccggatctt
tttactatcgaaagaatgaaaaagaatcgccatgagcgattgtatattgattatgtgcaa
tttggaaaaggaaagacactccctgttccatacactgccagaaagcgcagcgccggaacc
gttagcgcccccttattttgggaggaagtgaaagaaggtttatcgttgcgagacttcact
attgagactatgccggagcggatacggcaaaaaggctgccccttcacttcgtatgaggaa
gtgcggaacagccaaaagctggattctattttagaactggtgtga
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