Pseudotamlana carrageenivorans: C1A40_01055
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Entry
C1A40_01055 CDS
T05295
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
taj
Pseudotamlana carrageenivorans
Pathway
taj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1A40_01055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taj03019
]
C1A40_01055
03009 Ribosome biogenesis [BR:
taj03009
]
C1A40_01055
Enzymes [BR:
taj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1A40_01055
Messenger RNA biogenesis [BR:
taj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1A40_01055
Ribosome biogenesis [BR:
taj03009
]
Prokaryotic type
rRNA helicases
C1A40_01055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
FliG_M
Motif
Other DBs
NCBI-ProteinID:
AUS04151
UniProt:
A0A2I7SE30
LinkDB
All DBs
Position
224886..226709
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AA seq
607 aa
AA seq
DB search
MSTFQELGLNNDLLQAITDLGFTEPSEVQAKAIPILLGSEGDLVALAQTGTGKTAAFGFP
MLEKIDVDSRTTQGLILSPTRELCLQIANEMKLYGKYCKGLNVVAVYGGSSITDQARDIK
RGAQIIVATPGRMKDMISRRMVDISKIQYAVLDEADEMLNMGFKEDITDILSHTPTDKST
WLFSATMPREVAAIAKNFMHNPQEITVGNKNESTSNVSHEYYLVNARDRYQALKRLADAN
PDIFSVVFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMNAFRKNQIQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRKIKSIERI
IKRQFDKKEIPDGMEICEVQLMSLANKIHNTEVNPEIEKYLTEINEKFADTSKDELIKKF
FSVEFTRFFNYYNKSKNLNIAEGSYDRDGGREGGRDFKGGKSDSTRYFINVGSKDGFDWM
QLKDFLKEKLELGRDDVFKVEVKDSFSFFNTENEAKEKVLAFFTDFKHEGRFVNVEVSEN
RGGGRRNDRRGGGGGRRDDGKRAGGRRDDRKGGSGNRSERRRSEGSSKPRRSDSGGGNFD
RPRRSRR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagaattgggtcttaataacgacctattacaagctattacagattta
ggatttacagaacctagtgaggttcaagccaaagccatccctattttattaggatctgaa
ggcgatttagtggccctagcccaaacgggaacaggaaaaacagccgcttttggtttccca
atgttagaaaaaattgatgtggatagccgcaccacccaaggtttaattttatcacctaca
cgtgagctttgtttacaaattgccaacgaaatgaaattgtatggtaaatattgtaaaggc
ctaaatgtagttgctgtttacggcggatctagtattaccgatcaagccagagatattaag
cgtggcgcacaaattattgtagcgactccaggtcgtatgaaagatatgattagccgaaga
atggttgatatttctaaaattcaatatgccgttttagatgaagccgatgagatgttaaac
atgggctttaaggaagatatcactgatattttatcgcacacaccaaccgacaaaagtact
tggttattttctgcaaccatgcctagagaagttgctgctattgcaaaaaacttcatgcat
aacccgcaagaaattaccgttggaaataaaaatgaaagtaccagtaacgtttctcacgaa
tactatttagtaaatgctagagaccgttaccaagctttaaaacgtttagcagatgctaac
ccagatattttttctgtggtgttctgtagaacaaaacgtgatacgcaaaaagtagccgaa
caacttattgaagatggctacaatgcaggggctttacacggcgatttgagtcagaatcaa
cgtgatttagtcatgaatgccttccgtaaaaatcaaattcaaatgcttgttgcaaccgat
gttgcggctcgtggtattgatgttgatgatgtaacccacgttataaactaccaattacca
gacgaaattgaaacttacacccaccgttctggtcgtaccggacgtgctggtaaaacaggg
gtttctatggttattgtttctaaaagtgaagtccgtaaaattaaaagtatcgagcgtatt
attaaacgtcagtttgataagaaagagattccagatggtatggaaatctgcgaagttcag
ttgatgtccttagccaataagattcataatactgaggttaacccagaaattgaaaagtac
cttacggaaattaatgaaaagttcgctgatacttctaaagatgaattaattaaaaaattc
ttctcggttgagtttacacgtttcttcaattactataacaaatctaaaaacctaaatatt
gctgaaggttcttatgatagagatggtggtcgtgaaggcggaagagattttaaaggtgga
aaatctgattcgacacgctactttataaacgtaggtagtaaagatggtttcgattggatg
cagttgaaagacttcttaaaagagaaattagaacttggtagagatgatgtttttaaagtt
gaagtaaaagacagtttttctttctttaatactgaaaatgaagcaaaagaaaaggtatta
gcctttttcaccgattttaaacatgaaggtcgatttgtaaacgttgaagtgtctgaaaac
cgtggtggtggaagacgtaatgacagacgtggtggtggcggcggacgtcgtgatgacgga
aaacgcgctggaggaagacgtgacgatcgtaaaggtggttctggtaaccgaagtgaaaga
cgtcgtagcgaaggaagttcaaaaccaagacgctcggattctggcggagggaacttcgat
agaccaagacgttctagaagatag
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