Tamlana carrageenivorans: C1A40_01445
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Entry
C1A40_01445 CDS
T05295
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
taj
Tamlana carrageenivorans
Pathway
taj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1A40_01445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taj03021
]
C1A40_01445
03019 Messenger RNA biogenesis [BR:
taj03019
]
C1A40_01445
Transcription machinery [BR:
taj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C1A40_01445
Messenger RNA biogenesis [BR:
taj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C1A40_01445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA
Mor
AAA_22
DDHD
Motif
Other DBs
NCBI-ProteinID:
AUS04221
UniProt:
A0A2I7SE87
LinkDB
All DBs
Position
311636..313324
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AA seq
562 aa
AA seq
DB search
MFEISQLKEKKLADLQEIAKKLNVPKFRSLKKLDLVYQILDQQAADPKAVKAAVTPIEPI
EPAKNIEETDTKTAKPAARKPRQRVQKIVKNTPQKAEETTAAPTDNKVEAPVSEPVKTET
APKPQKEASKQDNSSKPKKQNDTSGNKQASRNQNNPNQNNQNKNQHRNQKNGNVDKGNKD
NRNRYREPDFEFDAIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKT
GDTVLGHVRPPKEGEKYFPLIKVSKINGQNPNVVRDRVSFEHLTPLFPQEKFNIAEKQST
ISTRIMDLFAPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQMILLIDERPEEV
TDMQRNVRGEVIASTFDKEAHEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNT
VQPASGKILSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFK
GTGNMELQLDRKISNRRIFPAIDLTSSSTRRDDILLDDTTVQRMWVMRKYLADMNPVEAM
EFINERFKQTKNNEEFLISMNG
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcacaattaaaagaaaaaaagctagctgatttacaggaaattgctaag
aaattgaacgttcctaaatttcgttcattaaaaaaattagatcttgtataccaaatatta
gatcagcaagctgcagaccctaaagcggttaaagcagctgtaacaccaatagaacctatt
gaaccagctaaaaatatagaggaaacggacacaaaaacggcaaagccagctgctagaaaa
cctagacaacgtgttcagaaaatagttaaaaacacccctcaaaaagcagaagaaactact
gcagcaccaaccgataataaagtggaagctcccgtttcagaaccagttaaaaccgaaacg
gctccaaaaccacaaaaggaagcttcaaagcaagacaatagttcgaaaccaaaaaagcaa
aacgatacgtcgggtaataaacaagcttctagaaatcaaaataacccaaatcaaaacaat
cagaataaaaatcaacacagaaaccaaaaaaatggtaatgttgataaaggcaataaagac
aacagaaaccgttaccgtgagcctgatttcgaatttgatgctatcattgaaagcgaaggt
gttttagatatcatgcaagatggatatggctttttacgctcttcagattacaactattta
tcatcaccagatgatatttatgtgtctcaatcacaaattagattatttggtttaaagact
ggtgacaccgttttaggtcatgtgcgaccgcctaaagaaggtgaaaaatacttcccttta
attaaggtaagtaaaattaatggtcagaatccaaatgtcgttagagaccgtgtatcattt
gaacatttaacgccacttttcccgcaagaaaaattcaatattgctgaaaaacaaagtacc
atttctacgcgtattatggatttatttgcacctataggtaaaggacaacgtggtatgatt
gtttcgcaaccaaaaacaggtaaaaccatgcttttgaaggatgtggcgaatgccattgct
gccaatcatcctgaggtgtatcaaatgattttattaattgatgaacgtcctgaagaagtc
acagatatgcagcgtaacgttcgtggtgaagtcattgcttctactttcgacaaggaagca
catgagcatgtaaaaattgcgaacatcgtactagaaaaggcaaaacgtttagttgaatgt
ggacatgatgtagttattttattagactctatcactcgtttagctcgtgcttataacacg
gtacaaccagcatctggaaaaatattaagtggtggtgttgacgcgaatgctttacacaaa
ccaaaacgtttctttggtgctgctcgtaatatcgaaaatggtggttctttaactattatc
gctaccgcacttaccgaaacaggttctaaaatggatgaggttatttttgaagaatttaaa
ggaactggtaacatggaacttcaattggatagaaaaatttctaaccgtagaattttccct
gctatcgatttaacctcttcaagtacgcgtcgcgacgatattttattagatgacaccaca
gtgcaacgtatgtgggtaatgcgtaagtatcttgccgacatgaatcctgttgaagccatg
gagtttattaacgaacgcttcaaacagactaaaaacaatgaagagtttttaatttctatg
aacggataa
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