Pseudotamlana carrageenivorans: C1A40_01755
Help
Entry
C1A40_01755 CDS
T05295
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
taj
Pseudotamlana carrageenivorans
Pathway
taj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1A40_01755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taj03019
]
C1A40_01755
Enzymes [BR:
taj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1A40_01755
Messenger RNA biogenesis [BR:
taj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1A40_01755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
MTS_N
Cas3-like_C_2
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AUS04273
UniProt:
A0A2I7SEE7
LinkDB
All DBs
Position
376988..378229
Genome browser
AA seq
413 aa
AA seq
DB search
MSFKDLKLNRPILRAVAEAGYDNPTLVQEKTIPLILEKKDMIVSAQTGTGKTASFALPIL
QSLFDRQDAPKKGKQVKALIVSPTRELASQISDNFNKYSTYTNLRTAVVYGGISIEPQKE
VLKKGVDILIATPGRLLDLHKQDIVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCTKE
KQILLFSATIPYKVEQLANLILNNPERIEVAQNASTSKNVNQLLYYVPKRNKIELCLHLL
RNTIKGHIIIFRRTKFGVEKLEQTLLKNGYKVESIHGDKSQTARQDALSKFKNRDANILI
ATDVAARGIDINDLDAVINFDLPNIPETYVHRIGRTARAGNTGVAYSLCSADEKTYVQTI
QQLIQIQLDVIEDHPYPLDPKAKPIVHKSKKTGSKHKKGRKSEASKKKKKRWY
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagatttaaaactcaacaggccaattttaagagctgtagctgaagctgga
tatgataatccgactttagttcaagaaaaaaccatccctttaatattagaaaaaaaggat
atgattgtttcggctcaaaccggaacagggaaaacagcttcctttgctctgcctatactt
caatctttatttgaccgacaagatgccccaaaaaaaggtaaacaagtaaaagccctcatt
gtaagccctaccagagaattggcatcacaaattagcgacaactttaataaatatagcacc
tatactaatttaagaacagcggttgtttacggtggtatttcaattgaacctcaaaaggaa
gttttaaaaaaaggagtcgatattttaatagcaactccaggtcgattattagatttacac
aaacaagatattgtcaatttagattatgttgaaacgcttgttttagatgaagccgatttg
atgttagacatgggttttattgatgatgttaaaaaaattgaacgcctttgcaccaaagaa
aaacaaattttacttttttcggcaactattccatacaaggtagaacaattagcaaattta
atattaaataaccctgaacgtattgaagttgctcagaacgcttcaacctcaaaaaatgtt
aatcaattgctttattatgtgcctaaacgcaataaaattgagttgtgtttacacttacta
agaaatacgattaaaggccatattatcattttcagacgtaccaaatttggcgttgaaaaa
ctggaacaaaccttgcttaaaaatggttataaagtagaaagtatccacggtgacaaaagt
cagactgcaagacaggatgctttaagtaaattcaaaaatagggatgctaatattttaata
gctaccgatgttgcagcgcgtggcattgacatcaatgatttagatgctgttattaacttt
gatttaccaaatatccctgaaacctatgtccatcgtattggacgaacggctagagcgggt
aatacaggcgtagcatattcgctgtgttctgctgatgagaagacttatgtacaaaccata
caacagctcattcaaatccaattagacgttattgaagaccacccatatccattagacccc
aaggccaagcctattgttcataaatccaaaaaaacgggaagtaaacacaaaaaagggcga
aaaagtgaggcttcaaaaaagaaaaagaaacgctggtattaa
DBGET
integrated database retrieval system
