Pseudotamlana carrageenivorans: C1A40_11280
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Entry
C1A40_11280 CDS
T05295
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
taj
Pseudotamlana carrageenivorans
Pathway
taj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1A40_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taj03019
]
C1A40_11280
03016 Transfer RNA biogenesis [BR:
taj03016
]
C1A40_11280
Enzymes [BR:
taj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C1A40_11280
Messenger RNA biogenesis [BR:
taj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C1A40_11280
Transfer RNA biogenesis [BR:
taj03016
]
Prokaryotic type
tRNA degradation factors
C1A40_11280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
AUS05997
UniProt:
A0A2I7SJD1
LinkDB
All DBs
Position
complement(2537236..2539479)
Genome browser
AA seq
747 aa
AA seq
DB search
MIPQVFKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKSSDVDFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMS
HDPEVMPDAMAGLAASAAIQLSDFPFECPISEVRVGRINGEFIINPSYTQLAESDIDMVI
GASADSVMMVEGEMDEISEEEMTEAIKFAHEAIKVQCEAQVKLAKAFGKKDTREYEPERE
DAELAQKIHDMAYDKVYAVAKAGSSKHERSAAFAEIKEEIIASFSEEELEDFGGLISKYY
SKAEKTAVRDLTLNEGLRLDGRKTTDIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLG
TSREANQIDMPSFEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVPE
DCPYTVRVVSEILESNGSSSMATVCAGTMAMMDAGVQLKKPVSGIAMGLISDADSGKYAV
LSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILGKI
TETISTPNAEVKDHAPTMITRRIPNEFIGALIGPGGKVIQELQKETDTTIVINEDPVTEE
GIVEVLGVGSKGIDAVNAKIDALMFKPEVGKVYQVKVIKMLDFGAVVEYTEAPGNEVLLH
VSELAWERTENVTDVVNMGDVFDVKYFGVDPRTRKEKVSRKAILPKPEGYVARPPRDDKR
SGGRDNRGNDNRGRDNRRDDRKPKGDR
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgattccacaagtttttaaagaggtcatagacctaggggacggtagagaaatctctatt
gaaactggaaaattagcaaaacaggcacatggctctgttgttgttcaatcaggaaaatgt
atgttgttatgtacagttgtttccaattacaaatcttcagatgtagactttttaccgcta
acagttgattatcgtgaaaaatttgctgctgcaggacgctatccaggtggtttcttcaaa
agagaagcacgcccaagtgatggtgaagtattaacgatgcgtttagtggatcgtgtttta
cgtccgttattcccaaaagattaccattcagaaactcaggtaatgattcaattaatgtct
catgatccagaagttatgcctgatgcgatggctggtttagcggcatcagctgcaattcaa
ttgtcagatttcccttttgaatgccctatttctgaagtaagagtaggtagaatcaatgga
gaattcattattaacccttcttatactcaacttgcagaaagtgatatcgatatggttatc
ggtgcatcagcagactctgtaatgatggttgaaggtgaaatggatgaaatttctgaagaa
gaaatgaccgaagctatcaaatttgcacacgaagcgatcaaagtgcaatgtgaagcccaa
gtaaaattggctaaagcttttggtaaaaaagatacgcgcgaatatgagccagaacgtgaa
gatgctgaattagcacaaaaaattcatgatatggcatatgataaagtttatgctgtagcc
aaagctggatcttcaaaacatgaaagaagtgctgcatttgcagaaataaaagaagaaata
atcgcttcattttcggaagaagaattagaagattttggaggattaatctctaaatattac
agcaaagctgaaaaaactgctgtaagagatttaactttaaatgaaggcttacgtttagat
ggtcgtaaaacaacagacatcagaccaatttggtgtgaagtagattatttaccatcaacg
catggttcttctatatttacacgtggggaaactcaagctttagcaaccgttactttagga
acttctagagaagctaatcaaatagatatgccatcttttgaaggtgaagagcgtttctat
ttacactataacttccctcctttttctacaggtgaagcaagaccaattcgtggaacatct
cgtcgtgaggtaggacatggtaacttagcgcaacgtgccttaaaaggtatggttcctgaa
gattgtccttacaccgtaagagtagtttctgaaatcttagaatctaatggttcttcttct
atggctacagtttgtgctggtactatggctatgatggatgcaggtgtacaattaaagaaa
cctgtttctggtatcgctatgggattaatttctgatgcagattctggaaaatatgctgtt
ttatctgatattttaggtgatgaagatcatttaggagacatggattttaaagttacaggt
actgccgatggtattaccgcatgtcaaatggatattaaagtaaaaggactttcttatgaa
attcttgttaatgctttaaaacaagccagagatggtcgtttacatattttaggaaaaata
acggagactatttcaactcctaatgcagaagttaaagatcacgctccaacgatgattaca
cgtcgtattcctaatgaatttatcggtgctctaatcggacctggtggaaaggtaattcaa
gaattacaaaaagaaactgatactacaattgtaattaatgaagatcctgttaccgaagaa
ggtattgttgaagttcttggtgtaggtagtaaaggtattgatgccgttaatgctaaaatc
gatgctttaatgtttaagccagaagtaggcaaggtttaccaagttaaagttattaaaatg
cttgattttggtgctgttgtagaatatacggaagctccaggaaatgaggttttattacac
gtaagtgaattagcttgggaacgtactgaaaacgtaaccgatgtggttaatatgggtgac
gtctttgatgtgaaatactttggtgtagacccaagaacgcgtaaagagaaagtatctcgt
aaagctattttaccaaaaccagaaggttatgtagcaagaccaccaagagacgataaacgt
tcaggtggacgtgataacagaggtaatgataatcgcggacgtgataatcgtcgtgacgat
agaaaacctaaaggagacagataa
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