Pseudotamlana carrageenivorans: C1A40_13290
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Entry
C1A40_13290 CDS
T05295
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
taj
Pseudotamlana carrageenivorans
Pathway
taj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1A40_13290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taj03019
]
C1A40_13290
03400 DNA repair and recombination proteins [BR:
taj03400
]
C1A40_13290
Enzymes [BR:
taj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1A40_13290
Messenger RNA biogenesis [BR:
taj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1A40_13290
DNA repair and recombination proteins [BR:
taj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1A40_13290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUS06357
UniProt:
A0A2I7SKE8
LinkDB
All DBs
Position
complement(3060713..3062620)
Genome browser
AA seq
635 aa
AA seq
DB search
MVHPINILERYWNFTSFRPEQEAIINAVIEGGDTFVLLPTGGGKSICFQIPALAKEGICI
VISPLIALMKDQVQALNEKGIKAMALTSGISYSQLDTMLDNCIYGNYKFLYLSPERLQQE
LVQDRIRLMNVNLIAVDEAHCISQWGSDFRPAYKNIALLRRIRPSANVVALTASARPEVV
SDIIKELDFIQPKIFKNSFSRPNLAYMVFHENDKHYRLETILKKNPAPSIVYVRNRKATI
EISAFLKSKNISATFYHGGLNNDEKEKHMTAWLQNQSQVMVATNAFGMGIDKPDVKTVIH
LNLPESIESYFQEAGRAGRNGHKAFAVILKNNSDETMVKNQFLSTLPPVDFIKQVYRKLC
SYFQISYGEGEYETFDFDFNRFCKTYQFPSILCYNALLFLDRNSVITLSKQFKNKVTLQF
IISNNALFNYLDTHENFGIIVKSILRMYGGIFDNLTKIDLKKVAKKASIPESLVISTLEQ
LEDDEIITLNLAKTDAQVTFIEPREDEKTINRIAPIIKQQNKLKQNQVKAMLDYIENDSI
CKSVQLLSYFGETEIEDCNICSVCIQKKNKKTSTTDLQALKKRVIGVLESGDYSSRALLE
TINCSENDLKAVLKLLLEHQIISITQKNTYKLSHL
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttggtacaccctataaacatattagaacgctattggaattttaccagttttagaccagag
caggaggctataatcaatgcggttattgaggggggagatactttcgtgctattaccaaca
ggaggcggcaaatctatatgtttccaaattccagccttagcaaaagaaggtatttgtatc
gtgatttcgccattaattgccttaatgaaagaccaagtacaggcattaaatgaaaaagga
attaaagccatggcacttactagcggtataagttacagccagttagacacgatgctggac
aattgtatatatggtaactataagtttctctatttatcgccagaacgcttgcaacaagag
ttggttcaagatcgtattcgactcatgaatgtaaatttaattgctgttgacgaagcacat
tgtatttctcaatggggcagtgattttaggcccgcctataagaacatagctttacttaga
cgaatacgtccctcggcaaacgttgtagcattaacggcttcggcgcgaccagaagtggtt
tctgatatcataaaagaactggattttattcagcctaaaatttttaaaaattccttttca
agaccaaatttggcctatatggtttttcatgaaaatgataaacattaccgcctagaaacc
attttaaaaaagaaccctgcgccttccattgtttatgttagaaataggaaagctactatt
gaaatatcggcatttttaaaatctaaaaacataagtgccactttttatcatggcggatta
aataatgatgaaaaggaaaagcatatgacagcttggctgcaaaaccagtcgcaggtcatg
gtagccacaaatgcctttggtatgggaatcgataaacccgatgttaaaaccgttattcat
cttaatttaccagaaagtattgaaagctatttccaagaagctgggcgtgcaggcagaaat
ggccataaggcttttgctgtaatcctaaaaaacaacagcgatgaaaccatggttaaaaat
caatttttaagcacacttcctccagttgatttcataaaacaagtttacagaaaactgtgt
agttattttcaaatctcttatggtgaaggtgaatacgaaaccttcgacttcgattttaat
cgtttctgtaaaacttatcaatttccatcaattttatgctataatgcattgcttttcttg
gatagaaacagcgttattaccctatctaaacaatttaaaaataaagtcaccttacaattt
attatttctaacaatgctctttttaattatttagatacccatgaaaatttcggaattatt
gtaaaatctattttaagaatgtatggcggcattttcgacaacttaacaaaaatagattta
aaaaaggtcgctaaaaaagcatcgattcctgaatccctagtaataagtaccttggaacag
ttagaagacgatgaaattatcactttaaacttagctaaaaccgatgctcaggtaacattt
attgaaccccgagaagatgaaaaaacaataaatagaattgcccctataattaaacaacaa
aacaaactgaaacaaaatcaagtaaaggccatgctcgattatattgaaaacgattcgata
tgcaaaagcgtgcaactgctctcctactttggcgaaacagaaattgaagattgcaacatt
tgttcggtatgtattcaaaagaaaaataaaaaaacttcgacaacagatcttcaggcactc
aaaaaacgggttattggtgttttagaatctggcgattattcttctagagcccttttagaa
accattaattgttcggaaaacgatttaaaagcggtattaaaattacttttggagcatcaa
attattagtattacacaaaaaaatacatataaattaagtcatttgtaa
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