Thauera aromatica: Tharo_1340
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Entry
Tharo_1340 CDS
T05381
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tak
Thauera aromatica
Pathway
tak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tharo_1340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tak03019
]
Tharo_1340
03009 Ribosome biogenesis [BR:
tak03009
]
Tharo_1340
Enzymes [BR:
tak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tharo_1340
Messenger RNA biogenesis [BR:
tak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tharo_1340
Ribosome biogenesis [BR:
tak03009
]
Prokaryotic type
rRNA helicases
Tharo_1340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVR88268
UniProt:
A0A2R4BLS4
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All DBs
Position
complement(1420157..1422085)
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AA seq
642 aa
AA seq
DB search
MTDSSLPDASLPSPATGAALRFADLALPAPLLSALTEVGYETPSPIQAECIPLLLAGRDI
LGEAQTGTGKTAAFALPMLARLDLTDSRPQVLVLTPTRELAIQVAEAFAKYAHHLKNFHV
LPIYGGQSMVVQLRQLSRGAQIIVGTPGRVMDHLERGSLKLDSLRALVLDEADEMLRMGF
IDDVEWILEHTPAERQTALFSATMPNVIREVARRHLREPEEIKIRAATATVSKISQRYWL
VRGVDKLDALTRILDAEESFDAALVFVRTKIATEELADKLAARGYAAAALNGDMTQGLRE
RVIEQLKNGALDIVIATDVAARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGAA
ILFVAPRETRMLKMIERATRQPITPIALPSSEEVTNLRVAQFKRQVVDTLGGGELGFFMN
VVNDLIDENELDVHEVAAALALLAQRDRPLQIEESGRGWEIATTPSAEGGRPPRAEHFTT
GAARERAQRPNRDEILARRRAFSNGALVRYRIEVGRNQGASPKEIVGAIANEGGIEGKFI
GQIHLFDDFATVELPARLPEDLLATLKRTRVRQMPLNIRALSDAEAAAMPERRPRPRDAA
PTGGEPRPRGKGSFDARGATHAGDKPHAHGAPRRPAKPPRRG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactccagcctccccgacgccagccttccttcgcccgccaccggcgccgccttg
cgcttcgccgacctcgcactgcccgcgcccctcctgtccgcgctgaccgaagtcggctac
gagacgccgtccccgatccaggctgagtgcatcccgctgctgctcgccggccgcgacatc
ctcggcgaagcccagaccggcaccggcaagaccgccgccttcgccctgccgatgctggcc
cgcctcgatctcaccgacagccggccgcaggtgctggtgctcacgcccacacgcgagctg
gcaatccaggtcgccgaggccttcgccaagtacgcccaccacctgaagaacttccacgtc
ctgccgatctacggcggccagagcatggtggtgcaactgcgccagctgtcgcgcggcgcc
cagatcatcgtcggcactccgggacgggtcatggaccacctcgaacgcggcagcctcaag
ctcgacagcctgcgcgcactcgtcctcgacgaagccgacgagatgctgcgcatgggcttc
atcgacgatgtcgaatggattctcgagcacaccccggccgaacgccagaccgcgctgttc
tcggcaacgatgccgaacgtgatccgcgaagtcgcccgtcgccacctgcgcgagccggaa
gaaatcaagatccgcgccgccaccgccacagtgtccaagatcagccagcgctactggctg
gtgcgcggcgtggacaagctcgacgccctgacccgcatcctcgatgccgaagagagcttc
gacgccgcgctcgtcttcgtgcgcaccaagatcgccaccgaagagctcgccgacaagctt
gccgcccgcggctacgctgccgccgcgctcaacggcgacatgacccagggcctgcgtgag
cgcgtgatcgagcagttgaagaatggggcgctcgacatcgtcatcgccaccgacgtcgcc
gcacgcggcatcgacgttccacgcgtctcccacgtcatcaactacgacatcccctacgat
accgaagcctacgtgcaccgcatcggccgcaccggccgcgccggccgcgagggcgccgcg
attctgttcgtcgccccgcgcgagacgcgcatgctgaagatgatcgagcgcgccacccgc
cagccgatcaccccgatcgcactgcccagcagcgaagaagtcaccaacctgcgcgtcgcc
cagttcaagcgccaggtggtcgacaccctgggcggcggcgagctggggtttttcatgaat
gtggtcaacgatctcatcgacgagaacgaactcgacgtccacgaagtggccgccgccctc
gccctcctcgcacagcgcgaccgccccctgcagatcgaggaatccggccgcggctgggag
atcgccaccacgccctccgcggaaggcggccggccgccgcgcgcggaacatttcaccacc
ggcgccgcgcgcgaacgcgcccagcgccccaaccgcgacgaaatcctcgcccgccgccgc
gccttcagcaacggcgccttggtgcgctaccgcatcgaggtcggccgcaaccagggcgcg
agcccgaaggagatcgtcggcgccatcgccaacgaaggcggcatcgagggcaagttcatc
ggccagatccacctgttcgacgacttcgccacagtggagttgcccgcccgcctgcccgaa
gacctgctcgccaccctgaaacgcacccgcgtccgtcagatgcccctcaacatccgcgcc
ctgagcgatgccgaagcggccgccatgcccgaacgccggccgcggccgcgcgacgccgca
cccaccggcggcgaaccccgtccgcgcgggaaaggcagtttcgatgcgcgcggagcgacg
cacgccggcgacaaaccgcatgcccatggcgcgccccggcgcccggccaagcctccccgc
cgtggataa
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