Thermocrinis albus: Thal_0159
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Entry
Thal_0159 CDS
T01179
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tal
Thermocrinis albus
Brite
KEGG Orthology (KO) [BR:
tal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tal03016
]
Thal_0159
Enzymes [BR:
tal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Thal_0159
Transfer RNA biogenesis [BR:
tal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Thal_0159
Prokaryotic type
tRNA splicing ligases
Thal_0159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADC88795
UniProt:
D3SNQ8
LinkDB
All DBs
Position
147397..148839
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AA seq
480 aa
AA seq
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MSLKEALQKKSPYVYLLPEGTVQGQKVPVYFYLSERLLELLEEDAIRQAANAATLPGVVK
AIYVMPDVHVGYGFPVGGVMATDTKEGIISPGSIGYDINCGVRLIATSLTADKVYPVREK
LMQEILRNVPAGVGSTGKLKLSKKELAEVLVKGARWAVERGFGFEEDLQHIESEGALPGA
DPSKVSNTAYERGSGELGTVGSGNHFVEIQVVDEIYDEEISETLGLYEGQVTIMVHSGSR
GLGHQVCVDYLKVAKDSLAKYGISLPDMQLACMPFSSPEGQSYFGAMKAAANYAFANRQI
LGYLTADTVRRFFGLSWEDLGYRLIYDLAHNIGKVEKHRVNGKVMELVVHRKGATRAFPP
FHGEVPPAYRSIGQPVLIPGDVGRYSFLLVGQERSMEMSFGSACHGAGRLMSRSKAKELV
RREGLEKVLEGLVVVAKGKGTIAEEIPQAYKDVSEVVRVVHELGIAKLVARMRPLGTLKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaaggaagcgctccagaaaaagagtccctacgtgtaccttctaccggaggga
acagttcagggccagaaagtacctgtatacttttacctcagcgagagacttctggagctg
ctggaagaggatgccataaggcaggctgccaacgccgccacattaccgggtgtggtgaag
gctatatacgttatgccagatgttcacgtaggctacggtttcccggtaggtggtgttatg
gccaccgataccaaggaggggatcataagtcccggttccataggatacgatataaactgt
ggggtcagacttatagccacctcccttaccgccgacaaagtgtatcctgttagggaaaaa
cttatgcaagagatcctcaggaacgtacctgcgggagtaggttccacaggtaaactcaag
ctttccaagaaggaactggcggaggtgctggtaaagggggcaagatgggctgtggagaga
ggattcggtttcgaggaagaccttcagcatatagagtcggagggtgctctacctggtgct
gatcccagtaaggtatccaacaccgcttacgagaggggaagtggtgagctgggtacggta
ggctcaggtaaccattttgtggagatacaggtggtagatgaaatatacgacgaggagata
tcggaaaccttaggtctctacgagggacaggtgaccataatggtgcactcaggttccaga
ggactgggtcatcaggtgtgcgtggactacctaaaggtggcaaaggacagcttggccaag
tacggtataagtcttcccgacatgcagttggcctgtatgccctttagctcacctgaaggg
cagtcttactttggtgctatgaaagctgcggccaactatgccttcgccaacagacagata
ctaggttacctgacggcggacacggtgagaaggttctttggtctatcttgggaagatcta
ggctaccgactcatatacgatcttgctcacaacataggaaaagtggaaaagcatagggta
aacggtaaagttatggagctggtggtgcacagaaaaggggctacgagagcttttccaccc
ttccacggtgaggtacctcctgcctacagaagtataggtcaacctgttctcatacccgga
gatgtaggaaggtactctttccttctggtaggtcaggaaaggagcatggagatgagcttc
ggcagtgcctgtcacggggcggggaggctcatgtcccgttccaaagccaaggagttggta
cgcagagaagggttggaaaaggtactggagggtctagtggtggtggccaaaggtaagggt
actatagcggaagagatacctcaggcctacaaggacgttagtgaggtggtaagggtggtt
catgagctgggcatagccaaactggtagcccgtatgcgcccactgggtaccctcaaagga
tag
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