Tyto alba (Barn owl): 104356115
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Entry
104356115 CDS
T07816
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03015
mRNA surveillance pathway
tala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104356115 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
104356115 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tala03019
]
104356115 (PABPC1)
03041 Spliceosome [BR:
tala03041
]
104356115 (PABPC1)
Messenger RNA biogenesis [BR:
tala03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104356115 (PABPC1)
mRNA cycle factors
Stress granule specific factors
104356115 (PABPC1)
Spliceosome [BR:
tala03041
]
Complex C
Other components
Complex C specific factors
104356115 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
104356115
NCBI-ProteinID:
XP_032843772
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccctatggcctccctctacgtgggggacctgcacccc
gacgtgacggaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccggtcgctcggctacgcctatgtcaacttccag
cagcccgccgacgctgaacgagctttggataccatgaactttgatgtcattaaaggcaaa
ccagtacgcatcatgtggtctcagcgtgatccatctctacgcaaaagcggtgtaggaaac
atcttcatcaaaaacttggacaaatcaattgataacaaagctttgtatgacacattttct
gcttttggaaacatcctgtcttgtaaggtggtatgtgatgaaaatggatccaagggttat
ggatttgtacattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgcaaggaacgtgag
gcagagcttggagccagagcaaaggaattcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgccctaagtgtg
aaagttatgaccgatgagagtggaaaatccaaaggctttggcttcgttagttttgaaaga
catgaagatgcccaaaaagctgtagatgagatgaatggaaaagagctcaatggaaaacaa
atctatgttggccgagctcagaaaaaggtggaaagacagacggagctgaagcgcaagttt
gagcaaatgaagcaggacaggatcaccagataccagggtgtaaacctttacgtgaaaaat
cttgatgatgggattgatgatgagcgtcttcgaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggcggtcgcagcaaagggtttggatttgtatgcttt
tcatcaccagaagaagccaccaaagctgtcacagaaatgaatggaagaatcgtggctact
aaaccattatatgtagctctagcccagcgtaaagaagagcgccaagctcatctcaccaac
cagtatatgcagagaatggcaagtgtaagagcagtacctaatcctgtaatcaacccttac
caaccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctactaatcaactcgctcaacttgctagacctagtcctcgctggactgct
cagggtgccagaccacatccattccaaaacatgcctggtgctatccgcccagcagcaccc
agaccaccatttagtaccatgagaccagcttcctcacaagttccacgagtcatgtcaacg
caacgtgttgccaatacatcaacacaaacaatgggtccacgtcctgcagcagcagctact
gcagctactcctgctgtacgcacagtaccacaatacaaatatgctgcaggtgttcgcaat
cctcagcagcatcttaatacacagccacaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaacccttgactgcttccatgttggcttctgcccccccacaagaacaaaag
cagatgttaggtgaacgtctatttcctctcattcaaagcatgcaccctactctggcgggt
aagatcactggtatgttgttggagattgacaactctgaactcctccacatgctcgagtct
cctgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagttaataatcctactggggttccaagtgtttaa
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