KEGG   Tyto alba (Barn owl): 104357818
Entry
104357818         CDS       T07816                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
tala  Tyto alba (Barn owl)
Pathway
tala03030  DNA replication
tala03410  Base excision repair
tala03420  Nucleotide excision repair
tala03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tala00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104357818 (RFC5)
   03410 Base excision repair
    104357818 (RFC5)
   03420 Nucleotide excision repair
    104357818 (RFC5)
   03430 Mismatch repair
    104357818 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tala03032]
    104357818 (RFC5)
   03036 Chromosome and associated proteins [BR:tala03036]
    104357818 (RFC5)
   03400 DNA repair and recombination proteins [BR:tala03400]
    104357818 (RFC5)
DNA replication proteins [BR:tala03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104357818 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104357818 (RFC5)
Chromosome and associated proteins [BR:tala03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104357818 (RFC5)
DNA repair and recombination proteins [BR:tala03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104357818 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104357818 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_24 AAA_16 AAA_22 AAA_11 AAA_assoc_2 AAA_14 DEAD RuvB_N DUF815 AAA_5 ResIII AAA_30 AAA_19 DNAX_ATPase_lid AAA_25 bpMoxR TIP49 TniB AAA_7 PhoH ATPase_2 nSTAND3 Thioredoxin_6 Hydantoinase_B Gp44_lid AAA_28
Other DBs
NCBI-GeneID: 104357818
NCBI-ProteinID: XP_042661182
LinkDB
Position
Unknown
AA seq 329 aa
MARAGGGNLPWVEKYRPQTLSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACAKQLYRGREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTTMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKMADIEYR
LAAGTSEKIQLSSLIAAFQVTRDLIVAEA
NT seq 990 nt   +upstreamnt  +downstreamnt
atggcgcgagcgggcggcgggaacctgccgtgggtggagaagtaccggccgcagacgctc
tcggagctggtgtctcacagggatatcctcagcaccgtgcagcggttcatcagcgaggat
cggctcccacatcttctcctctatggccctcccggtaccggtaagacctcgaccatcctc
gcctgtgccaagcagctctaccgggggcgggagtttggctccatggtgctggagctcaac
gcctccgacgaccggggtattgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggcttcaagctcgtcatcctggatgaagctgatgccatgacc
caggatgctcagaacgccctgaggcgagtgatcgagaagttcacggaaaacacccgcttt
tgcctcatctgcaactacctctccaagatcatccccgccctgcagtcccgctgcacgcgc
ttccgcttcggccccctcaccccggagctgatggtgccgcggctgcagcatgtcatacag
gaggagggggtggacgtgaccgaggacgggatgaaggctctggtgaccctctcgagcggc
gacatgcgcagagccctcaatatcttgcagagtaccaccatggcctttgggaaggtgacg
gaggagaacgtctacacctgcacgggacaccccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggacttttccactgcctatcgcaaaatcatggagctgaagacg
ctgaagggcttggccctgcaggacatcctcaccgagatccatctgtttgtgcacagagtt
gatttccccccctcgatccgcatccagttgctgatcaaaatggcagacatcgagtaccgg
ctggctgctgggaccagtgaaaagattcagctgagctccctcatcgcagctttccaagtc
accagggacctgatcgtggccgaagcctga

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