Tyto alba (Barn owl): 104358219
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Entry
104358219 CDS
T07816
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tala
Tyto alba (Barn owl)
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tala03016
]
104358219 (RTCB)
Enzymes [BR:
tala01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104358219 (RTCB)
Transfer RNA biogenesis [BR:
tala03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104358219 (RTCB)
Prokaryotic type
tRNA splicing ligases
104358219 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104358219
NCBI-ProteinID:
XP_042648867
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
TEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctccagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcacgtggaaggcgttttctacgtgaacgac
cccctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcaggt
ggctttttgcctgcaatgaaacagattgggaatgtggctgcattacctggcattgttcat
agatcaataggccttccagatgtccattcgggctatgggtttgccattggcaacatggct
gcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgtacaaatttggatgagagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccatattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcgctagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgaccccaacaaggtctcctcaagagcaaagaagaggggcctgcctcagctgggc
accctgggagcaggaaatcattacgccgagatccaggttgtggatgacatttacaacgaa
tacgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggtctgggccaccaggttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccaactggcatgtgccaggattgcctcc
acagagggacaggattacttgaagggaatggcagctgctggaaattatgcgtgggtcaac
cgctcttctatgacttttctaacgagacaggcctttgccaaagtcttcaacacaaccccg
gatgaccttgatatgcacgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtcgtggatggaaaggagcgaactctgctggtgcacagaaagggatcaaccagggcc
tttcctcctcaccatcctcttatcgctgttgattatcaactgaccggacagcctgtgttg
attggcgggaccatgggcacctgtagttatgttcttactggcacagagcaaggcatgact
gagaccttcggaactacttgtcatggagctggtcgtgcactgtctcgagccaaatctcga
cgaaacttggacttccaggatgtattggacaagctggctgacatgggcattgctatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaatgtgacagat
gtggttaacacctgccacgcagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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integrated database retrieval system
