Tyto alba (Barn owl): 104359040
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Entry
104359040 CDS
T07816
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
tala
Tyto alba (Barn owl)
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tala03009
]
104359040 (IGHMBP2)
03012 Translation factors [BR:
tala03012
]
104359040 (IGHMBP2)
Enzymes [BR:
tala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104359040 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
104359040 (IGHMBP2)
Ribosome biogenesis [BR:
tala03009
]
Eukaryotic type
Other ribosome biogenesis factors
104359040 (IGHMBP2)
Translation factors [BR:
tala03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104359040 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Helicase_RecD
Viral_helicase1
ResIII
DEAD
nSTAND3
AAA_16
AAA_22
Flavi_DEAD
UvrD-helicase
SLFN-g3_helicase
AAA_25
IstB_IS21
AAA
T2SSE
DAP3
ABC_tran
DnaB_C
RL
NTPase_1
UvrD_C_2
AAA_33
Motif
Other DBs
NCBI-GeneID:
104359040
NCBI-ProteinID:
XP_032849033
LinkDB
All DBs
Position
Unknown
AA seq
979 aa
AA seq
DB search
MAAGAAERFLELLREEREAELAESRAWQESISLKELQRRGVCLLKLQAANQRTGLYGRLL
VTFQPRKYDSDAELPYNSFGPGDVVGLYDSAGQGEQLSTGIVTRVTSKAVTVAFEESRDG
MLSLDHESSYRLLKLANDVTYNRLKKALNALKQYHGGPASDLIDVLFFSSDPSAFSETKP
LKLYNDSLDASQRDAVSFSLAQRELAIVHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPS
NVAVDNLVERLAGYKARVLRLGHPARLLEPIQRHSLDAVLARGDHAEIVADIRKDIDQAF
AKTKKAQDKGERSHFLSEIKALRKELKEREEAAMAAALTHANVVLATNTGASSDGPLKLL
PENHFDLVVIDECAQALEASCWIPLLKAPKCILAGDHKQLPPTIISHKAAAKGLSLSLME
RLIERYGEKIVKMLTVQYRMHQAIMQWASLEMYSGRLTAHPSVAQHLLKDLLGVTSTEET
TIPLLLIDTADCGLFELEVEDEQSKGNPGEVQLTGLHIHALVEAGVKAKDIAVVAPYNLQ
VDMLREHLCHKYPELEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEERRINVAVTRA
RRHVAVICDTRTVSSQPFLQRLVDYFSRHGEVRSAFEYLDNLVPENCAQEGRSERQQGAK
LPAASGPKPQPPPGRKLRAAATKPAGQKPEARFSPNTSGPGREGPGTKDGADRFRAMLVA
FLEGSEVQLDFPPSLNSHDRMLVHLMAEEYRLQHLSTGAGRERYISVRKKEPAQPSRPAA
TPRSEQPPGGETPVPAEPGGSSEGSGQVDLKTLHLERVQREKARREDAVRKAQEPSAGLQ
GSSRKKDKSEAKGKPAGTSGADSTAEEDIDALISAAIKADSTCSFPRCKASVTALGQLCL
HCNRRYCLSHHIPEVHGCGEKAKAHARQRISREGVLYPGSGSKDKTLDPAKRAHLQRRLD
KKLSELTSQRKSKKKDKEK
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggggccgcggagcggttcctggagctgctgcgggaggagcgggaggccgag
ctcgccgagagcagggcctggcaggaaagcatctccctgaaggagctgcagcgcagaggc
gtctgcttgctaaagctccaagctgccaaccagagaaccggcctctacggacggctgctc
gtgacgtttcagcctagaaaatacgattcagatgctgagctgccctataacagcttcggg
cctggggacgttgtgggcctttacgattcagctggccagggtgaacagctctccaccggc
atcgtaacacgtgtcacctccaaagcagtgactgttgcctttgaggagtctcgagatggc
atgctgagcttggaccacgagagctcttaccgcctgctgaaattagccaacgatgtcacc
tacaacaggctgaaaaaagctttaaatgcactaaagcagtatcatggtggtccagcctct
gacctgatcgacgtcctcttcttttcttctgatccaagcgcattcagtgaaacaaagcct
ctaaagctttacaatgactcgctggatgcatcgcagagggacgctgtctccttctcactg
gcgcagagggagcttgccatcgtccatggaccacctggcacagggaagaccacaacactg
gtagagatcatcttgcaagctgtacagcaaggcctgaaggtcctgtgctgtgccccttcc
aacgttgctgtggataatctggtggaaaggctggctggctacaaagcccgtgtcctgcgg
ctcgggcaccctgctcgcctgctggagcccatccagcggcattccctggacgcagtcctg
gcccgtggcgaccatgccgagatcgtggcagatatcaggaaggacatcgaccaggccttt
gcaaaaaccaagaaggctcaagacaagggagaacggagccattttctcagtgagatcaag
gcactgagaaaggagctgaaggaacgagaagaagctgccatggctgcagcccttacccat
gccaatgttgtccttgctacaaatacaggtgcttcctctgatggcccactgaagctgctc
cctgaaaatcactttgatctcgtggtgatagatgagtgtgctcaggccctggaagccagt
tgctggatacctctgctgaaggctccaaagtgcatcctggccggggatcacaaacagctt
ccccccaccatcatctctcacaaggctgctgccaagggcctttcactcagcctgatggag
cgtctcatcgagaggtacggggagaagattgtgaagatgctgacggtgcagtaccgaatg
caccaggccatcatgcagtgggcgtccttggagatgtacagcggccggctcactgctcac
ccatcagtagcccagcatttgctcaaggacctgctgggtgtcacctctacagaagagacc
acaattcccttattgcttatagacactgctgactgtggcctgtttgagctggaagtggaa
gatgaacagtctaaggggaatccaggggaggtgcagctgacgggtttgcacatccacgcc
ttggtggaagctggtgtgaaggcgaaagacatcgctgttgtagccccctacaacctccag
gtggacatgctcagagagcatctttgccacaagtacccagagctagaaattagatcagtt
gatggtttccagggaagagagaaagaggcagtgatcctgtcgttcgtgagatccaacagg
aaaggtgaggtgggcttcctcgcggaggagcggcggataaatgtagcggtgacccgggcc
cggcgccacgtggccgtcatctgcgacacccgcaccgtcagcagccagcccttcctgcag
cggctggtggattatttcagccggcacggggaggtgcgctccgccttcgagtacctcgac
aacctcgtgcccgaaaactgcgctcaggagggccgcagcgagcggcagcaaggcgcaaag
cttcctgcagcgtcgggccccaaaccgcagccgcctccggggaggaaactcagagcagcg
gccaccaaaccagcgggtcagaagccagaagcgcgtttctcccccaacacaagcggaccc
gggcgagagggcccggggacaaaagatggtgctgacaggttcagggccatgctggtggcc
ttcctggagggcagcgaggtgcagctggatttccccccgtccctcaattctcacgatcgg
atgctggttcacctgatggcagaggagtacaggctgcagcacctgagcaccggggcgggg
agggagcggtacatcagcgttcgcaagaaagagccggcccagccttcgcgacccgcagcc
accccccgcagcgagcagccccccggcggggaaactcctgtccctgctgagccaggaggg
agcagcgagggctcagggcaagtggacttgaaaaccctgcacctggagagagttcagagg
gagaaagccagacgggaggatgcagtgaggaaggctcaggagcccagtgccggccttcag
ggcagcagcaggaaaaaagacaaaagtgaagccaaaggaaagccagcgggtaccagtgga
gcagacagcacggcagaagaagatatcgacgctctgatttctgctgccattaaagctgac
agcacctgcagcttcccccgctgcaaagccagtgttacagccctgggacagctttgcctc
cactgcaacaggcgctactgcctcagccatcacatccccgaggttcacggctgtggggag
aaggccaaggcccacgcgcggcagaggatcagcagggaaggggttctctaccccgggagt
ggctccaaggacaagaccctggacccagccaagagagcccatctccagcggcgcctagac
aagaagctcagcgaactgaccagccagagaaagagcaaaaagaaagacaaggagaaatga
DBGET
integrated database retrieval system
