Tyto alba (Barn owl): 104359171
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Entry
104359171 CDS
T07816
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
tala
Tyto alba (Barn owl)
Pathway
tala04510
Focal adhesion
tala04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104359171 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104359171 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tala00536
]
104359171 (COL2A1)
Glycosaminoglycan binding proteins [BR:
tala00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104359171 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
104359171
NCBI-ProteinID:
XP_042652711
LinkDB
All DBs
Position
Unknown
AA seq
1485 aa
AA seq
DB search
MPGRRPLRLAAGLAILFLAAVAAQDRDLPEAGSCLQDGQTYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPTDQPSGQPGPKGQKGEPGDIKDVVGPRGPP
GPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ
MAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGPR
GPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA
GAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPA
GAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSA
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP
GPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPK
GATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS
GFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP
GTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD
GARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGAD
GQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGED
GPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPV
GPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPT
GKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLP
GPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP
GNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGSLRQHDVEVDATLKSL
NNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGET
CVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEELAPNTANIQMTFLRLLS
TEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHT
GKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccggcctcgccatcctcttcctcgccgcc
gtcgccgcgcaggaccgagacctccccgaggcgggcagctgcctgcaggacgggcagacc
tatagcgataaggacgtatggaaaccggagccgtgccggatctgcgtgtgcgacacgggg
accgtcctctgcgacgagatcatctgcgaggagctgcgggactgccccagccccgaaatc
cccttcggagagtgctgccccatatgtcccactgaccagcccagcgggcaacctggcccc
aaggggcagaagggtgaacccggtgacattaaagatgtcgtaggaccccgagggcctccg
ggaccgcagggcccggcgggtgagcagggacaacgaggggaccgtggtgagaagggggag
aagggtgctcctggcccccgggggagggatggagaacccggcacccctggaaatcccggc
ccccctggtccccctggacctcctggcccccccggcctcggtgggaacttcgcagctcag
atggcaggcggcttcgacgagaaggctggaggcgcgcagatgggcgtcatgcagggaccc
atgggccccatgggaccccgtggcccccccggcccttccggagctcccggtccccaagga
tttcaaggcaaccccggtgagcctggcgagcccggcgctgctggtccgatgggtccccgg
ggacccccgggacctcccggaaaacccggtgatgacggcgagactggcaaacctggcaaa
tccggcgagcgtggcccccccggcccccagggtgctcgtggcttccccgggacacccggc
ctccccggagtgaaaggccaccggggctatcccggcttggatggtgccaaaggagaggca
ggagctcctggagccaagggcgaatccggctcccccggcgagaacggctcccccggcccc
atgggtccccgtgggctgcccggtgagagaggacgtcccggcccctccggtgctgcgggt
gctcgtggcaacgacggtctccccggcccagctggaccccctggacctgtcggcccagct
ggagcccccggcttccccggcgcccccggctcgaagggtgaagctggtcccaccggcgca
cggggtcccgagggtgcccagggcccccgcggtgaatccggcacccccggctctcctggc
cctgccggcgcccccggtaacccagggactgacggcatccccggcgcgaagggctcggcg
ggtgcccccggcatcgccggcgctccgggcttccccggcccccgcggcccgcccggcccc
cagggagccaccggcccgctgggacccaagggacagacgggagaacccggcatcgcgggc
ttcaaaggcgaacaggggccgaaaggcgagacgggacctgcaggaccccaaggtgccccc
gggccggctggtgaggaaggcaagagaggagcccgcggtgaacccggtgctgccggcccc
gtgggaccacctggagagaggggtgctcccggcaatcgcggcttccccgggcaggatggg
ctggctggacccaagggcgctccgggcgagcgtggccccgccggcctcgcaggtcccaag
ggagccaccggtgaccccgggcgccccggagagcctgggctgcccggagccaggggtctc
accggccgcccaggtgacgctggtcctcaaggcaaagttggcccgaccggtgctcccggt
gaggacggccgccccggcccccccggcccgcagggtgctcgcggccagcccggcgtgatg
ggtttccccggtcccaaaggtgctaatggcgagcctggaaaagccggtgagaaaggactc
cccggtgccccggggctgcggggtcttcctggcaaggacggtgagacgggagctgccggc
cccccgggacctgctggccctgcgggcgagagaggagaacaaggagcccccggtccctcc
ggcttccaggggctgcccgggccaccaggtccccccggagagagcggcaaacccggagat
cagggtgttcctggagaagccggtgctcccggtctcgtcggtcccagaggtgaacgcggc
ttccccggtgaacgtggctctcccggcgcacaagggctgcaaggtccccgcgggctcccc
ggcacccccggcaccgacggacccaagggtgcaaccggaccggccggccccaacggcgcc
cagggtcccccagggctgcagggaatgcccggtgagagaggagcagccggcatcgccggt
cccaagggagaccggggagatgtcggagagaaaggtcccgagggagcccccggaaaggac
ggcgcacgcggtctgacgggtcccatcggtccccccggccccgctggccccaacggcgag
aagggtgaatccggccctcccggtccatccggcgctgccggtgcccgcggtgcccccggt
gaacgcggtgagcctggtgctcctggtcccgccggatttgccggccccccgggtgccgac
gggcaacccggtgccaaaggcgaacaaggagagcccgggcagaagggtgacgctggcgcc
cccggtccccaaggtccctctggcgctcctggcccgcagggtccaactggtgtaactggt
cccaaaggagcccggggtgctcagggtccccctggagccaccggattccccggcgccgcc
ggccgtgtgggaccacccggccctaatggtaacccaggcccccccggtccccctggctct
gctggcaaagacggtcccaagggcgctcgcggcgacgccggtcccccgggccgtgccggt
gaccccggtctccaaggccccgccggtccccccggcgagaaaggcgaacctggcgaggac
ggccctgcaggtcctgacggtccccccggcccccaaggtttggcaggacagcgcggcatc
gtcgggcttcccggacagcgtggtgagagaggcttccccgggctgccggggccatcgggc
gaacctgggaaacaaggagcacctggttctgcgggtgaccgcggcccccccggccccgtg
ggtccccccggtctgacaggtcctgctggcgaacctgggcgtgagggtaaccccggctcc
gacggacccccgggcagggacggcgcagccggcgtgaagggcgatcgtggcgagactggt
cccgtgggtgcccccggcgctcccggcgcccccggcgctcccggccccgtcggtcccacc
ggcaaacaaggagacagaggcgagacgggtgcgcaaggtcccatgggtccctccggtcct
gctggcgctcgaggcatgccgggtccccaagggcctcgcggtgacaagggtgagacggga
gaagctggagagagagggctgaagggccaccgtggcttcaccgggctgcagggtcttccc
ggaccacccggtccttctggagaccaaggtgctgctggtcccgcgggtccctccggtccc
aggggtcctcccggccccgtcggcccctctggcaaggatggctccaacggcatgcccggc
cccatcggtccccccggcccccgcggacgaagcggcgagccaggtcccgcgggtcctccc
ggaaacccaggtccccccggtcctcccggccccccaggcaccggcatcgacatgtcagct
tttgccgggctgggtcagacggagaagggtcccgaccccatccgctacatgcgggcggac
gaggccgccggcagcctgcggcagcacgacgtcgaggtggacgccacgctcaagtccctc
aacaaccagattgagagtatccgcagccccgagggctccaagaagaacccggccaggacc
tgccgtgacatcaagctttgccatcccgagtggaagagcggagactactggatcgacccc
aaccagggctgcaccttggacgccatcaaagttttctgcaacatggagacgggcgagacc
tgcgtctaccccaaccccagcagcatccccaagaagaactggtggaccagcaagaccaaa
gacaagaagcacgtctggttcgcagagaccattaacggcggtttccactttagctacggc
gatgaagagctggcgcccaacaccgccaacatccagatgaccttcctccgcctcctgtcc
accgaaggctcccagaacgtcacttaccactgcaagaacagcatcgcctacatggacgag
gagacgggcaacctgaagaaagccatcctcatccaagggtccaacgacgtggagatcaga
gccgagggcaacagcaggttcacgtacagtgtcctggaggacggttgcacgaaacacact
ggcaaatggggcaagacggtcattgagtaccgatcacagaagacctcgcgcctgcccatt
gtagatattgcacctatggacattggtggagccgatcaggagtttggtgtggatattggc
ccagtctgcttcttgtaa
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