Tyto alba (Barn owl): 104359174
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Entry
104359174 CDS
T07816
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104359174 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tala03019
]
104359174 (PARN)
Enzymes [BR:
tala01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104359174 (PARN)
Messenger RNA biogenesis [BR:
tala03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104359174 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
104359174
NCBI-ProteinID:
XP_042654624
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEVTRSNFKDNLSKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVTIPEDQKKF
IEKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTVSWKYPKGIHVETLESDKKERYIA
ISKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSSPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSYLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYIEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCINSFTGTSTVGKRSMSPIQEETGSDDMEEGEGQDPEYDQTDSCSES
LPESKKRAKKFKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaccagaagtaattttaaggataacctaagcaaagtatatgaagctattgaa
gagtcggacttcctggccattgatggggaattttcagggatcagcgatgggccttctgtt
agtgcattaaccaatggctttgacactccagaagaaagatatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaa
gaaaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatgggattccgtatttaaatcaggaagaagaaaga
cagctaagggagcagtatgatgaaaaacgttctcaggccaatggtgcaggatctctgtca
tacatttctcctaatgccacaaagtgtcctgtaacaattcctgaagatcagaaaaaattc
attgagaaagtagtggaacagatagaagacttgttaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacaggatttcagaggaaattaatttatcagaccgtgagctggaag
tatccaaaaggtatccatgttgaaactctggagtcagataagaaggagagatatattgct
attagcaaggtaaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaa
caggaagaattgaatgatgcagtaggattttccagagtcgtccatgccattgctaattct
ggaaagcttgttattgggcacaatatgctactggatgttatgcataccatacaccagttc
tattgtcccctacctgatgacctaagtgagttcaaagaagtaacatcatgtgtctttccc
cggctattggatactaaactgatggcaagtacacaaccttttaaggagatcattaataat
acatcccttgcagaattggaaaagcgtttaaaagaagttccattcagctctcctaaagtt
gaaagtgcagaagggtttccaagttatgatacagcttctgaacaacttcacgaagcagga
tatgatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcatac
ctcagtcctccaaaaatccacgtgtctgctagatcaaaactcatcgaacctttctttaac
aagctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
caaccgaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgac
ctttaccagcttttcagtgcctttggtaacattcaggtttcatggattgatgatacatca
gcatttgtatcattgagccagccagaacaagtacaaatagctgtaaacaccagcaggtat
gctgaaagttataggatccagacatatgcagaatatattgagaaaaaacatgaagaaaaa
caggcaaagagaaaatgtacagaagatagctggaaggagatggagagaaagcggttaaaa
actcaatgtacaccttacgtttcccagagtcgatactactgtattaacagttttacaggt
accagtacagtgggaaagagaagcatgagtcctattcaggaagaaactggttctgatgat
atggaagagggagaaggccaagatccagaatatgatcagactgattcctgttcagagtcc
cttccagaaagtaagaagagagccaaaaaattcaaaaagatcaagacagaacaagttcca
gcaggaagcctcacaactagttccactggaatttttgaagtccctgaaacgtggtag
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