Tyto alba (Barn owl): 104360094
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Entry
104360094 CDS
T07816
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03015
mRNA surveillance pathway
tala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104360094 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
104360094 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tala03019
]
104360094 (PABPC1L)
03041 Spliceosome [BR:
tala03041
]
104360094 (PABPC1L)
Messenger RNA biogenesis [BR:
tala03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104360094 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
104360094 (PABPC1L)
Spliceosome [BR:
tala03041
]
Complex C
Other components
Complex C specific factors
104360094 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RBD_DEAH11
RRM_5
RRM_3
RRM_RdRP1_2
ATP-grasp_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
104360094
NCBI-ProteinID:
XP_042656941
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGARALEFTNVYIKNFGDDMDDDRLREIFSQFGKTLSVKVMMDNSGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPAPGYFLPPLPQPQTRATF
YSPSPVLPVRPATRWSAQPSRPPSAYPAATPILRAAVPPRRLLSNISTMRQASTQVPRVS
PQAQRVANIGTQTVSTRVSSLPTPPRGAPQYKYSLAVRNVQPMGHMLPMVASQVGEPAVH
VQEQEPLTASMLAAAPPQEQKQMIGEHLYPLIHAMHPSLAGKITGMLLEIDNSELLLLLE
SPDSLHSKIEEAVAVLQAHQATESSHKSSEAAFLQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagcggccctggctatccgttagcctctctctacgtgggagacctccacccc
gatgtgactgaagccatgctctacgagaagttctcgcctgctgggcccatcatgtccatc
cgagtctgccgggacgttgccacgcgccggtcgctgggctatgcctacatcaacttccag
cagcccgtggatgctgagcgagccctggacaccatgaacttcgaagtgatcaaaggccgt
cccatccgcatcatgtggtcccagcgggaccccgggctcaggaagtcgggggttgggaat
gtcttcatcaagaacctggatgactccattgataacaaagccctgtacgatacgttctct
gccttcggaaacatcctgtcgtgcaaggtggtttgtgatgaaaacggatcccgtggctat
ggctttgttcactttgagactcacgaggcagcgactcgggccattgagaccatgaatggg
atgttgctcaacgaccggaaggtgtttgttggccatttcaaatcgcgcaaagagcgtgag
gctgagtttggggctcgggcgctggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgacgacagactgagagaaatattctcccagtttggaaagacactgagtgtc
aaagtcatgatggacaactctggccgctcaaagggcttcggatttgtcaacttcgagaag
cacgaagaagcccagaaggcggtggccgacatgaacgggaaggagatcaatgggcggatg
gtgtatgtgggccgggcccagaagcggctggagcgccagagcgagctgaagaggaaattt
gagcagattaagcaggagcgagtgagcaggtaccagggggtcaacctgtacgtgaagaac
ctggatgatgggatagatgatgagaggctgaggaaggagttttctccttatggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacagaaatgaacgggcggatcgtcagcact
aagcctctctacgttgcgctcgctcaaaggaaagaggagcggaaagcgatcctcaccaac
cagtacatgcagagattagccaccatgagggccctgcctggccctctcctgggctccttc
cagcccgccccggggtacttcctacccccccttccccagccacaaaccagagctaccttc
tacagccccagcccagttctcccagtccgtcctgccactcgctggagtgcgcagccctcc
cggcctccctcagcgtatcctgcagctacccccatcctgagggctgccgtgccgccccgg
cgcctgctgtccaacatcagcaccatgagacaggcttccacccaggtgccccgcgtgtcc
ccccaggcccagcgagtggccaacatcgggacgcagacagtcagcacccgggtgtcctcc
ttgcccaccccgccacggggtgctccacagtacaaatactccttggccgtcaggaatgta
cagcccatggggcacatgctgcccatggtggcctcgcaggtgggagaacctgctgtgcat
gtccaggagcaggaaccactgacagcatccatgcttgcagcagcccctcctcaggagcag
aagcaaatgataggtgagcacctctatcctctgatccacgcgatgcatccctcgctggcc
ggcaagatcactgggatgctgctggagatagacaactccgagctgctgctgctcctggag
tcccctgactccctgcactccaagatcgaggaagcggtggccgttctccaagcgcaccag
gctaccgagagctcgcacaagagcagcgaggcggcgttcctgcagtga
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