Tyto alba (Barn owl): 104362654
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Entry
104362654 CDS
T07816
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104362654 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tala03019
]
104362654 (PATL1)
Messenger RNA biogenesis [BR:
tala03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104362654 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
104362654 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104362654
NCBI-ProteinID:
XP_042640655
LinkDB
All DBs
Position
Unknown
AA seq
766 aa
AA seq
DB search
MFRYQSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKP
VASGERAGPAGEEGDLLGEPEDTLAERLTRLVIDSELEDPAIMQAVQTTVPAQQPGALNS
SIWDGSAVLRRIRGPLLAQEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSPVIG
SPPVRAVPIGTPPKQAALPNFNQQILCPKPVHIRATMQQRYPTPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPASGFRAFFGAPPAPPPSQPQHPPGPGSHLQSLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSVGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMGERKQKICDMYDNLRGKAPGQERPSDDHFMQIMCIRKGKRLVARILPFL
SPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SVTAPVPTNLHLTAVLQNKFGLSLLYLILSRGEELQSSDTNTELMQDNQWTELMLMATRE
LLRIPQAALAKPVSTPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtatcagtccctggaggactgcccgctggatgaagatgaagacgccttccag
gccctgggggaggaagatgaagatatcgaccagtttaacgacgatacgttcggagctggg
gctgtcgatgacgactggcaggaggcccacgagcggttggcggagctggaggacaaaccg
gtggcgagcggggaacgggccgggcctgccggcgaggagggggatctgctgggcgagccc
gaggacacgctggccgagcggctgacccgcctggtcatcgacagcgagctggaagacccc
gccatcatgcaagccgtgcagaccaccgtccctgcgcagcagcccggagcgctcaactcc
agcatttgggatggttcagctgtcctgcggcgaatccgggggccgcttctcgctcaggag
atgccatcagtgtccgtgctggactacgctctgcctcagagacccccccaggctcgagag
gaagagcgagacccctctgaacgggcgctgcctcgccgttcgtcatcccccgtcatcggg
agcccccctgtccgggctgtccccatcggcacccctcccaaacaggctgccctccccaat
ttcaaccagcagatcctatgtccgaagcctgtccacatccgagctaccatgcagcagcgc
taccccactccctatggcgagaggatgtcccccaaccagctctgcaacgtaccgaattcc
tccctcctgggacacccgttcccccacagtgtctctcccgttctcacccacctacagaga
gctcagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtt
tctggcctggttgggagccccctcccctctgtcaatccgaagctgctccagggcagagtc
gggcagatgatgtctccggccagcgggtttcgtgccttctttggggctccccctgctcca
cctccctcgcagccacagcacccaccgggccctggatcccacctgcagagcctgaggccg
cagcctcaaatgttccgaccggacacgacccacctacacccccagcaccgccggctcctg
caccagcgccagcagcagaaccgaaaccagcaccggagcctcaatggctcggtgggggat
cgagggggccaccggagcagccaccaggagcagatacgcaaagatccctacgccaacctc
atgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gatccttacttggatgactattactaccagaattacttccagaagctggagaagttagca
gcggcggaggaagtccatggtgacggtcctaaaaaggaacgcactaaactcatcacacct
caggtggctaagctggagcacacctacaagccggtgcagtttgagggctcgctggggaag
ctgacggtctccagcgtcaacaacccccggaagatgatcgacgcggtggtgacctcccgc
agcgaggatgatgagacaaaagagaagcaggttcgagacaagaggcgccagacccttgtc
acgatcgagaagacgtacagcctcctcctggacgtggaggactatgaaagacgctacctc
ctcagcctggaaggcgagcggccggccctgatgggcgagaggaagcagaagatctgcgac
atgtatgacaatctgagggggaaagcgcccgggcaggagaggccgagcgacgatcacttc
atgcagatcatgtgcatccgaaaagggaagcgcctcgtggcccggatcctccccttcttg
tcacccgagcaagcggctgatgtcctgatggcaacggccaggaacctgcccttcctcatc
aagaaggatgctcaggacgaggtgctgccctgcctgttgaggcccttctctcacgttctc
taccaccttcccttggggacagtcaccagccttgtgcagcagctaacgaacctacctcag
agcgtgactgcgccagtgcccaccaacctgcacctcactgctgtgctccaaaacaagttt
ggcctgtccctgctctacctgatcttgagccggggggaggaactgcagagctcggacacg
aacacggagctaatgcaggacaaccagtggacggagctgatgctcatggcgacccgggag
ctcctgcggatccctcaggcagccttggccaagcccgtgtccaccccctccaacctgatc
tcccttttctctcgctacgtcgaccagcagaagctcaacctgttggagacgaaattgcac
ttagtgcacggaatccgataa
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