Tyto alba (Barn owl): 104367495
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Entry
104367495 CDS
T07816
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104367495 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tala03400
]
104367495 (MSH6)
DNA repair and recombination proteins [BR:
tala03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104367495 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
104367495
NCBI-ProteinID:
XP_042645243
LinkDB
All DBs
Position
Unknown
AA seq
1350 aa
AA seq
DB search
MSRQSTLLRFFPRAPAPAPAPAPAPPAGEGARDGRQAAAGNGAPGRAAPRQRERGEKKKG
GGGGAAAETPSVPCGYSPGDLVWAKMEGYPWWPCLIYNHPTEGTIVRGKGKSTRVHVQFF
DDSPTRGWVSIKYLRPYKGSSDGETLKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELA
VCSEPSDTEEEEEEEEEMEQMSESASDNSDDCNSEEDVKNNKRVTIRESAIKAKRRRVLD
SDSDRDGSDVEFKPDVKEAASSEEASSGVDENESTDTETDAESVAESPVKVPSKRKRREV
NKPAKRRSLENECSETPKRAATISLEAKSKLTSFAAPESFESQANACSGGASGFALWEHE
KLDWLQEGRRKDAHRRRQGDPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYK
VGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKIARVEQTET
PEMMETRYKAMAHPTKFDKVVRREICRIITKGTQTYSVLDCDPSENHNKYLLSVKEKEDS
SGQRVYGVCFVDTSVGKFFVGQFSDDRHCSRFRTLVAHYTPVQVLYEKGNLSADTQKILK
GSLVSCIQEGLISGSQFWNASKTLKVLLEEGYFKEKHNSENGCSLPSVINSLTSESDSLG
LTPGENSELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDIDTAKTMSSGSFFAKTG
QRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSIND
RLDAIEDLLAVPDKLSEVSEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKY
SKKKIADFLSALEGFKVMNEIVDVMEEVASDFKSKVLKQLVTHKAKNPDGRFPDLSAELK
RWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKTVEEDLHKYLDKQRKLLGFKSVLYW
GAGKNRYQMEIPESAISRNLPEEYELKSTRKGYKRYWTKEIEKMLAAMVNAEERRDAALK
DCMRRLFYNFDKNSKDWQTAVECIAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFL
ELKNSRHPCITKTFFGDDFIPNDIVIGSKDEDSSSEASCVLVTGPNMGGKSTLMRQAGLL
VIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLV
LVDELGRGTATFDGTAIASAVVKELAEKIKCRTLFSTHYHSLVEDHSHTAAVRLGHMACM
VENECEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKTTLSL
RIFRYLCLVVDGATRDANAVRKLTAMIDHL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcagagcaccctgctccgcttcttccccagggccccggccccggccccggcc
ccggccccggccccgccggccggcgagggggcccgggatggccgccaggccgcggcgggc
aacggcgcgccgggcagagccgcgccccggcagcgggagcggggggagaagaagaagggc
ggagggggcggcgcggccgccgagacccccagtgtcccctgtgggtattcacctggtgac
ttggtctgggccaagatggaaggctatccttggtggccgtgtctcatatacaaccatcca
actgaaggaacaatagtcagaggaaaagggaaatccactcgtgtccacgtgcagtttttt
gacgacagccctacaaggggctgggtcagtattaaatatctgaggccatataaaggttca
tcagatggggagacattgaagggagggatgttttatagtacaaagcctgaaattaaaaga
gcaatggtgctagctgacgatgcaatgagtaaagataaaactaagcggctcgaactggca
gtatgcagtgaaccttcagacacagaggaggaggaggaggaagaggaggaaatggagcag
atgagtgaaagtgcctcagacaacagtgatgactgcaatagtgaggaggacgtgaagaat
aataagcgagtaacaatcagggaaagtgccataaaagccaaaagaagaagagtgttggat
tctgacagtgatcgtgatggctctgacgtggagttcaagcctgacgtgaaagaagcggca
agcagcgaggaggctagtagtggtgtggatgaaaatgaatctaccgacacagagacagat
gcagagagtgttgcagaaagtccagtaaaagtcccttctaaacggaagagaagagaggta
aacaagcctgctaaaaggaggagcttagaaaatgaatgttctgaaacgcccaaaagagca
gcaacaatttctttagaagccaagtctaagctgacatcatttgcagcacctgaaagtttt
gaatctcaagcgaacgcttgcagtggaggcgccagtggcttcgcactgtgggaacatgag
aagcttgattggctgcaggaagggagaaggaaagacgcgcacaggaggcggcagggcgac
cctgattatgacccgtgtactctgtatgtacccgaggactatctcaacaagtgtacgcca
ggaatgcggaggtggtggcagctgaaaagtcaaaacttcgatgctgtgattttctacaaa
gttggaaaattctatgagttgtatcacatggatgcagtcactggcgtcaatgagttgggc
ctgatctttatgaagggtacttgggcccattcaggttttccggaaactgcatttggcaga
ttctctgatgttctggtgcagaagggctacaagatagcccgtgttgagcaaacggagact
cctgaaatgatggaaacgcgctacaaggcaatggcccacccaacaaaatttgacaaggtt
gtacgccgagaaatatgcagaatcatcaccaaaggaactcagacttacagtgttctggac
tgtgatccctccgagaaccataacaaataccttctgtctgttaaggaaaaagaagactcc
tctggacaacgcgtttatggggtctgcttcgttgacacgtcagtggggaagttttttgta
ggccagttctcagatgaccggcactgttcgaggtttaggactctcgtagcgcattacact
ccggtgcaggtgctgtatgagaaggggaacctgtctgcggacacacagaagatactgaag
ggctcgcttgtttcttgcattcaggaagggctgatctctggttcccagttctggaatgca
tctaaaacactgaaagtccttcttgaagaaggatatttcaaggagaaacacaactctgaa
aatggatgttctctgccctctgtcatcaactctctgacatcagagagtgactcgctggga
ttaactcctggtgaaaacagtgaattagctttgtcagctcttgggggatgtgtcttctat
ctcaaaaaatgtctgattgaccaggagctgttatcgctggcgaactttgaggagtatgtc
cctgtggatattgatactgcaaaaactatgagttcgggtagtttctttgccaaaactggc
cagcggatggtgctggatggagtcaccctgatgaacttggaagtcctgcagaacggaact
aatggaaccacagaaggtactttgttggaaaggatcgattcgtgttgtacgccatttggg
aagcgactcctcaaacagtggctctgcgctccgctttgtaatcctaaatccatcaacgat
cgtttagatgctattgaggatcttctggcagtgccagataaactgtctgaagttagcgag
cacctgaagaaacttcctgaccttgaaaggttgctcagcaaaattcacagtattgggtcg
ccgcttaaaagtcagaaccatcctgacagcagggccatcttttatgaagaaatcaaatac
agcaaaaagaaaattgctgactttttgtctgcgctagaggggtttaaagtaatgaatgaa
atcgtcgatgtcatggaagaagttgccagtgacttcaaatctaaagtccttaagcagcta
gtcacccacaaagccaaaaatccagatggccggttcccagacttgagtgcagagcttaaa
aggtgggatactgcttttgatcataaccaggctcgaaagacgggagtgattactccaaag
gcaggttttgaccctgattatgataaagcactacaggatattaaaactgttgaggaagat
cttcacaagtacctggataagcaacgcaaactgcttggatttaaatctgtgctgtactgg
ggggcgggcaaaaaccgataccaaatggaaataccagaaagtgcaatatcacgtaatttg
cccgaggaatacgagttgaagtcaaccaggaagggctacaaacgttactggaccaaggag
atagagaagatgctggcggcaatggttaatgcggaagagcgcagagatgcagcactgaaa
gactgtatgaggcgtttgttctacaacttcgataaaaacagcaaagactggcagacagct
gtggaatgcattgctgtcttagatgtcttgatgtcccttgctaactacagtcaagatggt
gatggaccactgtgccgacctgtaattctgctccctgtggatagtgctcctcccttcctg
gaacttaaaaattcacgccatccatgcattacaaaaactttctttggggatgattttatt
cctaatgacatcgtgataggcagcaaagatgaagatagcagtagtgaagcttcctgtgtg
ttagtaactggcccgaatatgggtggcaagtctacactcatgagacaggctggtctcctg
gttataatggctcaactgggatgctacgtacctgctgaagtctgcaggcttacaccgatt
gacagagtatttacgaggctcggtgcctcagacagaattatgtcaggtgaaagtaccttc
tttgttgaattgagtgagacttccagcattctccagcatgcaacagagcattcccttgtt
cttgtggatgaactgggcagaggcacggctacttttgatggaacagctatagcgagtgca
gttgtgaaagaacttgcagagaagatcaagtgtcggactctgttctccacacactaccac
tccctggtggaggaccactcgcacacggcggctgtgcggctgggccacatggcatgcatg
gttgaaaatgagtgtgaagatccaagccaggaaacaattacgttcctgtataagttcatt
gaaggcgcatgtccaaagagctacggcttcaatgcagcaaggcttgcggatattccggag
gaagttattcagaaggggcacagaaaagcaaaagaatttgaaaaaactaccctttcactg
agaatatttaggtacctctgcctggtggtggacggtgcaacacgggatgcaaatgctgtt
cggaaacttaccgctatgatcgatcatctctaa
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