Tyto alba (Barn owl): 104367748
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Entry
104367748 CDS
T07816
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tala
Tyto alba (Barn owl)
Pathway
tala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104367748 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tala03019
]
104367748 (MTREX)
03041 Spliceosome [BR:
tala03041
]
104367748 (MTREX)
03009 Ribosome biogenesis [BR:
tala03009
]
104367748 (MTREX)
03016 Transfer RNA biogenesis [BR:
tala03016
]
104367748 (MTREX)
Enzymes [BR:
tala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104367748 (MTREX)
Messenger RNA biogenesis [BR:
tala03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104367748 (MTREX)
Spliceosome [BR:
tala03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104367748 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
104367748 (MTREX)
Ribosome biogenesis [BR:
tala03009
]
Eukaryotic type
Pre-60S particles
Helicases
104367748 (MTREX)
Transfer RNA biogenesis [BR:
tala03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104367748 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104367748
NCBI-ProteinID:
XP_032865077
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEGSAGTASAAKKNKAGAAESARRPGKRLEEKSAVSVTGKSKREAEV
GSTEDAVLGKMPKLEDVISEDVNLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGI
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPNEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEENYLNSFRPNLMD
VVYTWSNGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagcgtgttcgaggagggctcggccggcacc
gcctccgccgccaagaagaacaaagcgggggccgccgagagcgccaggaggccgggaaaa
cgattggaggaaaaatccgcagtatctgtgacagggaagtccaagagggaagctgaagtc
ggtagtacagaagatgctgttttgggaaagatgccaaaattggaagatgttatatcagaa
gatgttaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacacatgaggttgcacttccagcagatgaagacttcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaaact
gtttgtgcagagtatgcgattgcccttgctttgagggagaaacagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaaatatcgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
actgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcatgg
gtgatttttgatgaaattcattacatgagagattcagaacgcggtgtggtttgggaagag
acaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattccaaat
gctcgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
accgactatcgacccactccactgcagcattatatattcccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggagaccagaaaggcaggaaaggaggaata
aaagggccttcaaatgtttttaagattgtaaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaggactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtattcaataatgcaatt
gattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcacggtggtctgcttcctatcttaaaagaaaccatagaa
attcttttctctgagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccaggaccgtgctatttaccagtgccagcaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcaacttttgaagggttcagctgatcctttgaacagtgcattccacctgacgtacaac
atggtattgaatttgcttcgagtagaggaaattaaccctgaatatatgttagaaaaatcc
ttctatcagttccaacattatagaactattccagaaatagtagaaagagtgaataatttg
gaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaagccaaag
tattgcttgccctttctacagccagggagactggtaaaggtgaagaatgaaggtgatgac
ttcggatggggagtggttgttaatttctctaaaaaatcgaatgttaagccaaattctggt
gaattggacccactatatgtagtggaagtgctactgcactgcagtaaagagagtttgaaa
aattctgctactgaggctgcaaagccagccaggcctaatgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctattagcagcgtccgactttacataccgaaa
gatctaaggcctattgacaacaggcaaagcgtgttaaaatctatacaagaagtacagaag
cgatttcctgatggagtaccattactggaccctattgatgacatgggcatcaaagatcaa
ggactgaagaaagtaattcaaaaagtggaggcatttgagcataggatgtattcgcatcct
cttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagcagcaaagcgagaactgaaaaaggcaagaacagtcttacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactagggtttgccacatcttcagat
gttattgagatgaaaggacgagtcgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaagcaactgcactg
ctaagctgctttgtatttcaagagaactccagtgaaatgccgaaattgacagagcagctg
gcaggaccacttcgacaaatgcaggagtgtgcaaaaaggatcgccaaggtgtcagcagaa
gcaaaactagaagttgatgaagaaaattatttaaattctttcagacccaacctaatggat
gttgtgtatacatggtcaaatggagctaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgttgcatgagaagactagaagaattgcttcggcagatgtgt
caggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaggggattaca
aagatcaagagagacattgtctttgctgcaagcctttacctctaa
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