Tyto alba (Barn owl): 104369402
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Entry
104369402 CDS
T07816
Symbol
RC3H1
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tala
Tyto alba (Barn owl)
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tala03000
]
104369402 (RC3H1)
04121 Ubiquitin system [BR:
tala04121
]
104369402 (RC3H1)
Transcription factors [BR:
tala03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104369402 (RC3H1)
Ubiquitin system [BR:
tala04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104369402 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
104369402
NCBI-ProteinID:
XP_042642329
LinkDB
All DBs
Position
Unknown
AA seq
1124 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPTRAPTDLPSVSVTKQLQMVPRGSQLYNTQQADMFYQDPRGA
APPFEPAPYQQGVYYPTQSMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYVPESRDRYQQTEG
YCPVAPHISQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVDSKAMR
DQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGATTKSV
ISDYNPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAEREQQLRME
LQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQLSLELH
QVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKVPAEDLALTFSSDVPNG
SALTQENIGLLSNKTASLSLSEDPEGGGDNHDSQRAGVTPTSAP
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaacaattcggaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgcccttttgaccagaccactatcaatacagac
attgaactccttcctgtgaactcagccttgctgcagctagtgggtgctcaggttcctgag
cagcagccaattactttatgtagtggagctgaagataccaagcattatgaggaaggcaag
aaatgtgtggaagaattagcgttgtacctcaaaccactcagcagcgcaagaggtgtaggt
cttaacagtactactcagagcgtgctaagtcgtcccatgcaaaggaaacttgtgacatta
gttcattgccagctagtggaggaagaagggcggatcagagccatgcgtgcagcgcggtcg
cttggtgaaagaacagtcacagagctcattctgcagcatcagaatcctcagcagctctct
tccaacctctgggctgcagtgagagccagagggtgccagttccttggaccagcaatgcaa
gaggaggctttaaagctagttctgctggctctggaagatggatctgctttgtcacgaaag
gtcttggttctctttgtggttcagaggctggagccgcgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcatgcttcaaggtgacaaagcga
gatgaggattcttctctgatgcaactgaaggaggaatttcggacttacgaagctctgaga
agggaacatgattcccagatagttcaaatagctatggaagcaggtttacgcattgcacca
gatcaatggtcctcactgctatacggagaccagtcacacaaatcccacatgcagtctatc
attgacaagttgcagaccccagcctcatttgcacagagtgtccaggaattaactattgct
ctgcagaggactggagatccagctaacctgaatcgtcttcgacctcacctagagctcctg
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctagttgctgtaaggactgtggttcatggcttagttgattatatccagaatcacagcaag
aaaggagcagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgccga
gacatgaagcagagaggaggatgtccccgaggggccagctgcacctttgcacattcacag
gaggagctagaaaaattccgcaaaatgaacaagcgtctggttcccagaagacccctgagt
gcctccctgggccagctaaatgaggtgggcctgccttcaggagctatcctctcggaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacgcaacttatttctcgagggactgactccggttacgaaactgctctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgtccccaaaagctctatttctgccttaccagtgaaccctcatcctgtgcccact
cgggcaccgacagatctgccttcagtatctgtcaccaagcagttgcaaatggtaccacga
gggtctcagttgtataatactcagcaagcagatatgttttatcaggatcctagaggagcg
gccccaccatttgagccagcaccctaccaacaaggagtttactaccccactcagtccatg
tctcgctttgtccgacctcctccatcagctcccgagcccggtccaccttatttagaccat
tacccaccctaccttcaggatcgtgtggtgagcccacagtacacacagccacagcagtat
ccccccatgggacagcccatctacccaccgcactacgacagccgtcgcgtatatccccct
gtccagccataccagcgagaggagattgtccgagggagccctgtacccatcgagatccca
caagcagctgtaccttcctacgtacccgaatccagagacagataccagcaaacagagggt
tattgcccagtggctccccatatcagtcagatcagaccttcatgccataggcctcatcct
agcctagacgaacttcaccggcgaagaaaagagatcatggcccagctagaggaaaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccgtttcattcagag
gagtatttggatgaagacctgaaggtagctgggaaatacaaaggaaatgactacagccag
tactctccctggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaaccc
aaagatgttgtggcagcaaggagcgtggagatggcgaacgtagatagtaaggccatgcgt
gaccagcgattagacatgcaacggagagcagcagaaactggtgatgatgacctcattcca
tttggagaccgaccaactgtgtcgagatttggggctatctctcgtacttccaaagcgatg
taccagaattctggtcccatgcaggccatggcggttcagggagctaccaccaaatcagtc
atttcagactacaatccttatggaactcacggtggctggggaggctctccatattctcct
catcaaaatataccttctcagggacgtttcaatgacagggagagactgtccatgtcagat
gtggctggtcatgggaaacagttgccctcagctgaacgagagcagcagctgcgcatggag
ctgcagcaagtagaccatcagattagccagcagacacaaatgcgaggactagaggctgtt
agtaacaggctgctgttgcagagggaggcgactaccctggcaggccaaccacagccccca
cccccacctcccaagtggcctgggatgatctcaagtgaacagctgagcttggagctacac
caggtggaaagggaaattgggaagagaacccgggagctgagcatggagagccagtcttcg
ctggatataaaaaacaaactgggcaccactaaacagacagaaaatggacaattagaaccg
caaagcaaggttccagctgaggacctcgcactgacattcagcagtgatgttccaaacgga
tcagccttgacacaagagaacattggcctcctgtcaaacaagacggcttctctcagcctg
tcagaggacccagagggaggaggagacaaccacgactcccagagagcgggagttacaccc
acgtctgctccgtga
DBGET
integrated database retrieval system
