Tyto alba (Barn owl): 116962808
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Entry
116962808 CDS
T07816
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
tala
Tyto alba (Barn owl)
Brite
KEGG Orthology (KO) [BR:
tala00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tala00536
]
116962808 (COL25A1)
Glycosaminoglycan binding proteins [BR:
tala00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116962808 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116962808
NCBI-ProteinID:
XP_042652927
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MGGGGKEIKAAAAEGCKSAPGKSRGAAGRDGSGQRGCGGERCPRRAGPGGSALAVLLSAL
AAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAMMQEKVERLLAQ
KSYEHLSKIRVAREAPPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGPPGPKGEKGDQG
DQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRG
MPGIPGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGRDGQVGEPGLPGIVGEKGAAGLKG
DPGERGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGI
KGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGRGERGEPGVPGQKGKTGEPGSRGPKGSK
GDTGDRGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVTGPPGPPGPQGL
QGPKGEPGSPGTPGVDGEQGPKGSKGDIGDPGMPGEKGGIGLPGLPGANGMKGEKGDVGL
PGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGLKGLKGEAGQKGDRGPLGLP
GASGLDGKPGPRGVDGPVGPHGPAGPKGDRGEKGTAGDPGPRGPYGLPGKDGEPGLDGFP
GPRGEKGDIGEKGEKGFRGIKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagccgccgcagccgaagggtgtaaaagcgcgccg
gggaagagccgcggagccgcagggcgggatggcagcgggcagcgcggctgcggaggggag
cgctgcccgcggagggccgggccgggcggctccgcgctggcggttctgctctccgcgctg
gccgccgcctcctgcgtctacctgggggtgcggaccagcgacctccaggccagggtcgcg
gccatcgagggcgcccgggggggcttctctgccgccgccccgctcccgccgctgcccggc
ttctccctggagcagctgaacgcgatgatgcaggagaaagtggagcgacttctcgcccag
aaatcctacgagcacttgtcaaaaatacgagtagcgagagaagcgcctccagagtgcaac
tgcccaccaggtcctccagggaaaagaggtaagcggggcagaagaggagagactggacct
cctggtcagcctggtcctcaaggccctcctggtccaaaaggcgagaagggagatcaaggt
gatcagggccctcggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcag
cagctcattaaacgccgcctcattaagggggaccaaggacaagctggaccccctgggcct
ccagggccaccaggacccagaggtcccccaggagatactggcaaagatggtcctcgtggg
atgcctggcataccgggtgagccaggaaagccaggagaacaaggattgaccggacctcag
gggcctccaggacaaaagggttctgtcggagtgcctggtgttccagggagagacggacaa
gtgggtgaacctggtttgcctggcatagtgggagagaagggagcagcagggcttaagggt
gaccctggagaaagaggcgaaaagggtgatgctggagaaaatggaccaaagggtgacaca
ggagaaaagggtgatcctggttcttctgctgcaggaattaagggtgaacctggggaatct
ggacgacctggacaaaagggtgaaccaggtcttcctgggcttcctggactccctgggata
aagggtgaaccaggtttcattggtccacaaggagaacctgggttgccagggctaccagga
acaaagggtgacagaggagaggcaggccctgttgggaggggtgagcgaggtgaacctgga
gttcctggacaaaaggggaaaacaggtgaacctggatctagaggcccaaaagggtcaaag
ggtgatacaggtgacagaggtgacacaggatctgcaggtccacgggggccacctgggcag
aagggtgatcaaggtgcaacagagataattgattataacggcaatatccatgaagctctg
cagaggattgctaccctgactgtcacgggacctccaggaccaccaggaccccaagggctg
caagggccaaagggtgaaccaggatccccaggaaccccaggagttgatggggagcagggt
cctaaaggctcaaaaggagatataggtgatcctggaatgcctggagaaaagggaggaatt
ggactgcctggactgccaggagccaatggcatgaaaggcgaaaaaggagatgttggtttg
cctggtgcccaaggtccttcaatgataggaccacctggaccaccagggccacatggtcct
ccaggccctatgggacctcacggacttcctggcccaaagggtgaaccagggttaaatggt
cttaaaggattgaagggtgaagcaggtcaaaagggtgacagagggccccttggtcttcca
ggagcatctggcttagacggaaagccaggaccccggggtgtagatggcccagttggtccc
catggccctgcaggtcctaaaggagacagaggtgaaaagggaactgcaggtgaccctgga
cccagaggaccgtatggcttgcctggcaaagatggcgaacctggccttgatggtttccct
ggtcctcgaggagaaaagggtgatataggagaaaagggagaaaagggattccgtggaatt
aagggggaaaaaggggagccaggccagcctggcctggatgggctggatgccccttgccaa
ttgggtcctgatggattaccgatgcctggctgttggcaaaagtga
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