KEGG   Tyto alba (Barn owl): 122153863
Entry
122153863         CDS       T07816                                 
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
  KO
K06100  symplekin
Organism
tala  Tyto alba (Barn owl)
Pathway
tala03015  mRNA surveillance pathway
tala04530  Tight junction
Brite
KEGG Orthology (KO) [BR:tala00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    122153863
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    122153863
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tala03021]
    122153863
   03019 Messenger RNA biogenesis [BR:tala03019]
    122153863
Transcription machinery [BR:tala03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     122153863
Messenger RNA biogenesis [BR:tala03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     122153863
    U7-dependent histone pre-mRNA processing factors
     122153863
SSDB
Motif
Pfam: Symplekin_C WD40 Beta-prop_EML_2 WD40_CDC20-Fz EIF3I WD40_Prp19 WDR90_beta-prop_4th WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st WDR55 Beta-prop_IFT122_1st Beta-prop_TEP1_2nd Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 122153863
NCBI-ProteinID: XP_042653239
LinkDB
Position
Unknown
AA seq 1355 aa
MAAAAPGAAEGPAALPAQPLELKSQFRTREGSYRLLGPEPRARAGPAAAPGPSPPAAGPG
PAAAASPGPAALPPVRLSMVRLALPPAEEPGGPAERSRVCFNLGRELYFYGGAGSGGRGS
RRSLDLHKPIDKRIYKGTQPTCHDFNQFTAGADTIALLVGFSAGQVQYLDLVKKDTSKLF
NEERLIDKTKVTFVKWLPETERLFLASHASGHLYLYDAEQPCGAAAPQYNLLTQGEGFSV
FACKSKTPRNPLLKWAVGEGALNEFAFSPDGRSLACVSQDGCLRVFHFDSMLLQGMMKSY
FGGLLCVCWSPDGRYVVTGGEDDLVTVWSFAEGRVVARGHGHKSWVNAVAFDPFTGAAQT
PQPPELSGGEEEDEPPDPLVRRSPAVTYRFGSAGQDTQFCLWDLTEDVLYPRPPLSRART
LTGSTDAGVPVPGLPRSLSRSNSLPQPGGTGSARCPPPDVPPAFSVGRFATLTLQERKGP
SGAEKEHKRYHSLGNISRSGEKPPGGAGSRARLDTAKVLGTALCPRIHEVPLLEPLVCKK
IAHERLTVLLFLEDCIVTACQEGLICTWARPGKAVSVEQTKHLKEEPKEEKAAKPESVVI
KRRLSALAQGQAISVLGAQGSATNLLEEEAPQAKRRPEPIIPATQPRLAGAGGRKKVFRL
GDVLKPLSDAQMEKLKLSAVKRILRAERAVACSGAAQARVKILASLVTQFEVPLKSEVLA
FVLDDIRGRLDLAFAWLFQEYNVYLSRFPAGSLERYDECLIGLLAGLQEKPDQKDGVFTK
VVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDLSSHEKD
KVRQQALLFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEET
IKQCLYLYLALLPHNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVE
NCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQA
LPKLIKLNPIVVKEVFNRLLGTQHGDGASAVSPLNPGELLIALHNIDSSKCDMKSIIKAT
NLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQALTMYPRLGGFVMNILSRLIMK
QVWKYPKVWEGFIKCCQRTKPQSFQVVLQLPPPQLAAIFEKCPELREPLLSHVRALTPHQ
QAHIPLSTMAILEASARHEPDAREGPPGEEKPPKQLGEEDAKGKTVPPAPGGCPSTAPPP
SEAPPDLGGADLEPPPIFISVPEDEESSGGAGSPPDGTLDPPTATPKDPPTSTEPPSAEA
LPSTPPSSEPPPPGTQSPEVPPGGAPDAPPGPAEG
NT seq 4068 nt   +upstreamnt  +downstreamnt
atggcggcggcggccccgggggcggccgagggtcccgcggcgctcccggcgcagccgctg
gagctcaagagccagttccgcacccgggaaggctcctaccggctgctggggcccgagccc
cgcgcccgcgccggccccgccgccgcccccgggccttccccgcccgccgccggccctggc
cccgccgccgccgcctccccgggcccggccgcgctgccgccggtgcggttgtccatggtg
cggttggcgctgccgcccgccgaggaaccggggggtccggctgagcgtagccgggtttgc
ttcaacttgggccgtgagctctacttctacggcggggccggttccggtggtcgcggcagc
cgccggtccctggacctgcacaaacccatcgacaaacgcatttacaaggggacccaaccg
acctgccacgacttcaaccagttcacggcgggcgccgacaccatcgcgctgctggtgggc
ttctccgccgggcaggtccagtacctcgacctggtgaagaaggacaccagtaaactcttc
aacgaggagcgcctgatcgacaaaacgaaggtgacttttgtcaaatggctgccggagacc
gagcggctcttcctggcctcccacgccagcggccacctctacctgtacgacgctgagcag
ccctgcggggccgcggccccccagtacaacctcctgacgcagggcgagggcttcagcgtc
ttcgcctgtaagagcaagaccccccgaaaccccctcctcaaatgggcggtgggcgaggga
gccctcaacgaatttgctttctcgccggacgggcgctcgctggcctgcgtcagccaggac
ggctgcctccgcgtcttccattttgactccatgctgctgcaggggatgatgaagagttat
ttcggggggctgctctgcgtctgctggagccccgacgggcgctacgtggtgacggggggc
gaggatgatttggtgaccgtctggtcctttgccgaagggcgggtggtggcccgaggtcac
ggtcacaagtcttgggtcaacgctgtggccttcgatcctttcaccggagcggctcagacc
ccccaaccccccgagctgagtgggggcgaggaggaggacgagcccccggatcccctcgtc
cgccgttcccccgccgtcacctaccgcttcggttcggccggccaagacacccagttctgc
ctgtgggacctgaccgaggacgtcctctaccctcgtccccccctctcccgcgcccgtacc
ctcaccggatcgacggatgccggcgttcctgtcccagggctgccccgctcgctctcccgt
tccaacagcctcccgcagccgggggggacgggctcagcccgctgccccccacccgacgtc
cccccggcttttagcgtcggtcgtttcgccacgctgacactgcaggaacggaagggacct
tccggtgctgaaaaagagcacaaacgttaccacagtttggggaacatcagccggagcggg
gagaaaccccccggcggtgccggatccagggctcggctggatacggccaaggtgctgggg
acggcgctgtgcccccgaattcacgaggtgccgctgctggaacccctcgtctgcaagaag
atcgcccacgagcgcctgaccgtgctgctgttcttggaggattgtatcgtcaccgcctgc
caggaggggctcatctgcacctgggcacggcccggcaaagccgtgagcgtggagcagacg
aagcacctgaaggaggagccgaaggaggagaaggcggccaaacccgagagcgtcgtcatc
aagcggcggctgtcggcgctggcccaaggccaggccatctccgtgctgggtgcccaaggc
tcggccaccaacctgctggaagaagaagccccccaggccaagcgtcgccctgagcccatc
atcccggccacgcagccccggttggcgggtgccggcgggcgcaagaaggttttccgcctg
ggcgacgtcctcaagccgctgagtgacgcgcagatggagaagctgaagctcagcgccgtc
aagcgcatcctacgcgccgagcgcgctgtcgcctgcagcggggccgcccaggcccgcgtg
aagatcttggcctcgctggtgacgcagtttgaggtgccgctgaagagcgaggtgctggcc
ttcgtcctcgatgacatccgcggccgcctcgacttggccttcgcttggctcttccaggag
tacaacgtctacttgagccgcttccccgccggcagcctggagcgctacgacgagtgtctc
atcgggctcctcgccgggctccaggagaagcccgaccagaaggatggggttttcaccaaa
gtggtgctggaagcgccgctgatcaccgagagcgcactggaggtcatccgcaagtactgc
gaggacgagagccggacctacctgggcatgtccacgctgcgtgacctcatcttcaagcgg
ccgtcgcggcagttccaatacctccacgtcctcttggatctcagctcccatgagaaggac
aaggtacgccagcaggccctcctcttcatcaagcgcatgtacgagaaggaccaactgcgg
gagtacgtggagaagtttgccctcaactacctccagctcctggtgcaccccaacccaccc
tccgtcctcttcggtgccgacaaggacacggaggtggcggcgccgtggacggaggagacc
atcaagcagtgcctctacctctacctggcactgctgccccacaaccacaagctcatccac
gagttggcttccgtctacaccgaagccatcgctgacatcaagcgcaccgtcctgcgggtc
atcgagcagccgatccgcgggatggggatgaactcgcccgagctgctgctgctggtggag
aattgccccaagggagccgagacgttggtgacgcgctgcctgcacagcctgacggacaaa
gtgcccccctcgcctgagctggtgaagagggtccgcgacctctatcacaagcggctgcca
gatgtgaggttcctcatccccgtcctcaatgggctggagaagaaagaggtgatccaggcg
ctgcccaaactcatcaagctcaaccccatcgtggtcaaggaggtcttcaaccgcctgctg
gggacacaacatggtgacggtgcctcggctgtgtccccgctgaacccaggggagctgctc
atcgccctgcacaacatcgactcctccaagtgcgacatgaaatccatcatcaaagccacc
aacctgtgcttcgccgagcggaacgtctacacgtcggaggtgctggcggtggtgatgcag
cagctgatggagcagagcccgctgcccatgctgctcatgcgcaccgtcatccaggcgctc
accatgtacccccgcctcggcggcttcgtcatgaacatcctctcccgcctcatcatgaag
caggtgtggaagtaccccaaagtctgggagggcttcatcaagtgctgccagcgcacgaag
cctcagtccttccaggtggtgctgcagctgccccccccgcagctggctgccatctttgag
aaatgccccgagctgcgcgaacccctgctcagccacgtccgcgccctcaccccccaccag
caagctcacatcccgctctccaccatggccatcctcgaagcttctgcccgccacgagccc
gacgcccgggagggcccccccggagaggagaagccccccaagcagctgggtgaggaagat
gccaaagggaagacggtgcctccagccccgggggggtgtcccagcactgcgcccccccct
tctgaggcacccccagatctcgggggggccgaccttgagcccccccccatcttcatcagc
gtccctgaggatgaggagagctcagggggggctgggtccccccctgatggcaccctcgac
ccccccacagccacccccaaggacccccctaccagcacagagcccccctcagctgaggcc
ctccccagcaccccaccctcttcggagccccccccgcctggcacccagagccctgaggtg
ccccccgggggggcccccgatgcccccccagggccggcagagggatga

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