Thermoleophilum album: JDY09_01460
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Entry
JDY09_01460 CDS
T08835
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
talu
Thermoleophilum album
Pathway
talu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
talu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JDY09_01460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
talu03400
]
JDY09_01460 (mfd)
Enzymes [BR:
talu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JDY09_01460 (mfd)
DNA repair and recombination proteins [BR:
talu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JDY09_01460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDT93948
LinkDB
All DBs
Position
300832..304209
Genome browser
AA seq
1125 aa
AA seq
DB search
MGELRAVVRDGAEQPAVRALVDDLRRGSTDAFVSQSMRAFVLGSLFEAEHKRPALVVVAD
DRAAANLAADLRALLAPRLVRLLPARGVRYESHLAPPPHLVGLRVAAVDALIDSPAGEQP
VVVASVQALAEKLPDPELRPRGFVIERGELLDLDECVAQLVELGYERVEQVEERGQFAVR
GDILDIYPATEERAVRCELFDIEIERLAWFSTFTQRTLAEAERVEIAPVSELAREHRERA
ELAAHADDERPEIAELLPVDRFRRLLDLVPSEAIVAVVDRDEVRTSLSELWDEVEAIFGG
RDASHLYVEPSELERDLDARVALRLSSVASGQAHELRAQAAVPVARDLHQAEAELEKLVR
SGYRVVVAWSRRGELERALLNLERVRAREIGDDLGPGAAVLFAQGTLRDGFVWPGGRIAL
IPEHRLLRRRRRPDAAAESRRALRAMTELRSGVAVVHEDHGIARFVGFTTRTVAGVTRDY
LELEFRDGDRVFVPSDQLHKVSRYVGADAADPPLSKLGGRQWEQMKLRARRAATQLAGEL
LTLYAERRRRAGFAFPPDGAWQREFEQRFPFEETPDQLEAIEAVRADMEEARPMDRLICG
DVGYGKTEVALRAAFKAATAGKQVLFLVPTTVLAQQHYGTFAERMRDWPLRIEVVSRFRS
PSEVRAVLRDFSEGRVDILIGTHRLLSRDVRPKDLGLLIIDEEQRFGVRQKELLRQLRLK
VDVLSMSATPIPRTLQMALSGLRDMSVIRTPPEGRRPVQTYVGEWDEEVVRRAIRRELER
KGQVFYLHNRVETIAEAAERVRALVPNARVEIAHGQMEDDELEQVMLRFVRGEADILVCT
TIIESGIDIPRANTLIVERADELGLAQLYQIRGRVGRSRERAHAYLLYPSAAALSEQARQ
RLATLSDHTELGSGLQIAMRDLEIRGAGNLLGEEQSGHVAAVGFELYVRMLEEAVAELSG
EAADEPEPVRLDVPVDAYVPSDYIAYEAAKIDVHRRIAGAREVAELIMLRRELEDRFGPV
PEPLDNLIKLQDARIKLGRAGARTVEFRQGRMVVSPLELDARQVRALRERIPEAFYESGR
ATLRVRVPDDPEQRFAAVVQAAEAVLEVASAPVREEAAGSAGTLR
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagctgcgagccgtagtgcgtgacggtgccgagcagccggcggtgcgcgcgctc
gtcgatgacctgaggcgcggaagcaccgacgccttcgtgtcgcagagcatgcgcgcgttc
gtgctcggctcgctgttcgaagccgagcacaaacgtccggcgctggtggtggtcgccgac
gaccgcgccgccgcaaacctcgctgccgacctgcgcgcgctgctcgccccgcggctcgtc
cgcctcctcccggcgcgcggcgtgcgctacgagtcgcacctcgcaccaccgccccacctt
gtcggtctgcgcgtcgcggcggtggacgccctgatcgacagtccggccggcgagcagccg
gtggtcgtggcgtctgtccaggcgctcgccgaaaagcttcccgatcccgagctgcggccg
cgcggcttcgtgatcgagcgcggcgagctgctcgacctcgacgagtgcgtcgcgcagctc
gtcgaactcggctacgagcgcgtcgagcaggtcgaggagcgcggccagtttgcggtccgc
ggcgacattctcgacatctatcccgccaccgaggagcgcgcggtgcgctgcgagctcttt
gacatcgagatcgagcggctcgcctggttctccacattcacccagcgcacgctcgccgag
gccgagcgggtggagatcgcgccggtgtccgagctggcgcgcgagcaccgcgagcgcgcc
gagctcgccgcacacgccgacgacgagcgacccgagatcgccgagcttttgccggtcgat
cgcttccgccgcctgctcgacttggttccgagcgaagcgatcgtggcggtcgtcgaccgc
gacgaggtgcggacctcgctctccgagctgtgggacgaggtcgaggcgatcttcggcggc
cgcgacgccagccacctctatgtcgagccgtcggagctcgagcgcgatctcgacgcgcgc
gttgcgctccgcctgtcgtcggtcgcaagcggacaggcacacgaactccgcgcccaggcg
gcggtaccagtggcgcgcgacctccaccaggccgaggctgagctcgaaaagctcgtccgc
tcgggctaccgggtggtcgtcgcttggagtaggcggggcgagctcgaacgggcgctcctc
aacctcgagcgcgtacgtgcccgcgagatcggcgacgaccttggtccgggcgctgccgtt
ctgttcgcccagggcacgctgcgcgatggtttcgtctggcccggcggacggatcgcgctg
atccccgagcaccgactactgcgccgccggcgccgccccgacgctgccgccgagagccgc
cgtgcgctgcgggcgatgaccgagctgcgcagcggcgtagctgtcgtccacgaggaccac
ggcatcgctcgcttcgtcggtttcacgacccgcacggtggcgggcgtcacgcgcgactac
ctggagctcgagttccgggacggcgaccgcgttttcgttccctccgaccagctccacaag
gtcagccgctacgtcggtgccgacgccgccgacccgccgctgtcgaaactcggcgggcgt
cagtgggagcagatgaagttgcgcgcgcggcgcgcggcgacgcagctggcgggtgagcta
ttgacgctgtacgcggagcggcggcggcgcgccggcttcgctttcccgcccgacggtgcg
tggcagcgcgagttcgagcagcgcttcccgttcgaggagacgcccgaccagctcgaggcg
atcgaggcggtgcgcgccgacatggaggaggcgcggccgatggatcgcctgatctgcggc
gacgtcggctacggcaagaccgaggtcgcgctgcgcgctgccttcaaagctgcgaccgcg
ggcaagcaagtgctgtttctcgtccccaccaccgtgctcgcccagcagcactacggcacc
ttcgcggagcggatgcgcgactggccgctacggatcgaagtcgtttcgcgcttccgctcg
ccgagcgaggtgcgtgcggtgctacgcgacttcagcgagggtcgcgtcgacatcctgatc
ggcacgcacaggctgctctcgcgcgacgtgcggcccaaagacctcggtcttctcatcatc
gacgaggagcagcgtttcggggtccgccagaaagagctgttgcgccagctgcggctcaag
gtcgacgtgctctcgatgtcggcgacgccgatcccacgcacgctgcagatggcgctgtcg
gggctgcgcgacatgtcggtgatccgcacgccgcccgagggtcgccgtccggtccaaacc
tacgtcggcgagtgggacgaagaggtcgtgcgccgcgcgatccgccgcgagctcgagcgg
aaaggacaggtcttctacctccacaaccgtgtcgagacgatcgccgaggcggccgagcgg
gtgcgcgcgctggtgcccaacgcgcgcgtcgaaatcgcgcacggtcagatggaggacgac
gagctcgaacaggtgatgttgcgcttcgtgcgcggcgaggcggacatcctcgtctgcacg
acgatcatcgaatcggggatcgacataccccgtgccaacacgctgatcgtcgagcgcgcc
gacgagctcgggctcgcgcagctctaccagatccgcggccgcgtcggacgctcgcgcgag
cgggcgcacgcctacctcctctacccatcggcggccgcactgtccgagcaggcgcggcag
cggctagcgacgctgtccgaccacaccgagctcggctccggtctgcagatagcgatgcgc
gacctcgagatccggggcgccggcaacctgctcggcgaggagcagtccgggcacgtcgcg
gcggtcgggttcgagctgtacgtgcggatgctcgaggaggctgtcgccgagctgtccggc
gaggcggccgacgagcccgagccggtgcgcctcgacgtgcccgtcgacgcctacgtgcca
tccgactacatcgcgtacgaggcagcgaagatcgacgtgcaccggcgcatcgccggtgca
cgcgaggtcgccgagctgatcatgttgcgccgcgagctcgaggaccgcttcggtccggtg
cccgaacccctcgacaacctcatcaagctccaggacgcgcgcatcaagctggggcgggca
ggggcgcgcacggtcgagtttcggcaggggcggatggtcgtctcgccgctcgagctcgac
gcgcgccaggtgcgcgccctgcgtgagcggatccccgaggctttctacgagtccggccgc
gcgaccctgcgcgtccgcgttcccgacgatcccgagcagcgcttcgcggcggtcgtgcaa
gcggccgaggcggtgctcgaggtggcgagcgctccggtgcgcgaggaagcggccgggagc
gcgggtacgctccgctag
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