Thermoleophilum album: JDY09_05175
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Entry
JDY09_05175 CDS
T08835
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
talu
Thermoleophilum album
Pathway
talu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
talu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDY09_05175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
talu03019
]
JDY09_05175
Messenger RNA biogenesis [BR:
talu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JDY09_05175
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
WDT92798
LinkDB
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Position
complement(1107037..1108713)
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AA seq
558 aa
AA seq
DB search
MSGRLRVLPLGGLGEIGKNMTVVEYDGRIVVVDAGLMFPTPDQLGIDLVLPDFGYLRENR
DRIEAFVLTHAHEDHVGALPFVLRELAVDEVPPIYAGRLTAALVRSRLDEHRLKPALAAV
RDLPPGEPVVAGPMTVELIRMAHSIPDSFAVLIETPLGPVLVTGDYKFDQTPIDGQPPDM
RRLAEIGHKGLLLLCGDSTNADRPGLSPSEASVGPNLERVFAECEGRVVVTSFASNIHRI
QQVLDAARATDRRVAIVGRSMRKAFNVARSLGYLETDDGRLVPPHEVEDFPPHKLAVLST
GSQGEPLSALRRMAHGEHPHVRLRAGDTVVFSATPIPGNERAVNETIDRIYRIGADVVTP
RDITVHASGHGHAEDLKLMIRLTNPRYVMPVHGDYRRLRLHAKLAESVGIAPERIFITEN
GRPLEIDAHGARLGKPVAAGVIFVDGMEVGDIEDVALRDRRMLSADGVFIVVATISSQDG
RSVAPPEVLFRGVPFLTSEQDAFVSELREEIERSLARAARDQVLEPDLLRSHLHDDVAAF
VYERLRRRPLVLPVVVEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggtcggctgcgcgtcctgccgctcggcgggctcggcgagatcggcaagaacatg
accgtcgtcgagtacgacgggcgcatcgtcgtcgtcgacgctggcctgatgttccccacc
ccggaccagctcgggatcgacctcgttctgccggacttcggctacttgcgcgagaaccgc
gaccggatcgaggcgttcgtccttacccacgcccacgaggatcacgtcggcgcgctgccg
ttcgtgttgcgcgagctcgcggtagacgaggtgccgccgatctacgccgggcgcctcacg
gcagcgctggtgcgttcacggctagacgagcaccgcctgaagcctgcgctcgcagccgtc
cgcgacctgccgccgggcgaacctgtagtggcgggaccgatgaccgtcgagctgatccgc
atggcgcactcgatccccgacagcttcgctgtgctgatcgagacgccgctcgggccggtg
cttgtgacaggcgactacaagttcgaccaaacgccgatcgacggtcaaccgcccgacatg
cgccgcctcgccgagatcggccacaaggggctgctcttgctgtgtggcgactcgaccaac
gccgaccgtcccggcctgtccccgtcggaggccagcgtcggtcccaacctcgagcgcgtg
ttcgccgagtgtgaggggcgcgtagtcgtgacctccttcgcctcgaacatccaccgcatc
cagcaggtgctcgacgcggcgcgcgccaccgaccgccgcgtggcgatcgtcgggcgttcg
atgcgcaaagcgttcaacgtcgcgcgctcgctgggttatctcgagaccgacgacgggcgg
ctcgtgcccccgcacgaagtcgaagactttccgccccacaagcttgctgtcctgtcgacc
ggctcccagggcgagccgctgtcggcgcttcgccggatggcccacggcgagcacccccac
gtgcgcctgcgcgcaggcgacaccgtcgttttctcagcaacgccgatacccggcaacgaa
cgcgctgtcaacgaaacgatcgatcgcatctaccggatcggcgccgacgtcgtaaccccg
cgcgacatcacggtgcacgcgtccggccacggacacgccgaggacctcaagctgatgatc
cgtctcaccaatccgcgctacgtgatgccggtgcacggcgactaccggcgcctgcgtttg
cacgcgaagctcgcggaatcggtgggcatcgcgcccgagcgcatcttcattaccgaaaac
ggccgcccgctcgagatcgacgcgcacggcgcgcgactgggcaagccggtcgcggcaggt
gtgatcttcgtcgacggcatggaggtgggcgacattgaggacgtcgcgcttcgcgaccgg
cggatgctgtcggccgacggcgtcttcatcgtcgtcgcgacgatctcgagtcaggacggt
cgctcggtcgcgccaccggaggtgctgttccgcggcgtgcccttcctgaccagcgagcag
gacgcattcgtgagcgagctgcgcgaggagatcgagcgctcgctcgcgcgagcagctcgc
gaccaggtgctcgagccggacctgctgcgcagccacctgcacgacgacgtcgccgctttc
gtgtacgaacggctgcgccgccggccgctggtgttgcccgtggtcgtcgaggtctag
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