Thermobifida alba: FOF52_10585
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Entry
FOF52_10585 CDS
T08159
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
talx
Thermobifida alba
Pathway
talx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
talx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOF52_10585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
talx03019
]
FOF52_10585
03400 DNA repair and recombination proteins [BR:
talx03400
]
FOF52_10585
Enzymes [BR:
talx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOF52_10585
Messenger RNA biogenesis [BR:
talx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOF52_10585
DNA repair and recombination proteins [BR:
talx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FOF52_10585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
UPT21350
UniProt:
A0ABY4L4V4
LinkDB
All DBs
Position
complement(2400327..2402462)
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AA seq
711 aa
AA seq
DB search
MATPALPETDPALRDTAEAHLRALAGADARLREDQWRAVHALAAQHRRVLMVQRTGWGKS
AVYFVATALRRAAGAGPTVIVSPLLALMRNQIAAAERAGIRAHTVNSTNPEEWERTYAAV
AEGAVDVLLISPERLNHPEFRDRVLPGLAAGAGLVVIDEAHCISDWGHDFRPDYRRIRTL
LGELPPGVPVLATTATANARVTRDVAEQLETGDDTPTLVLRGSLDRESLHLAVVRLPDSA
ARLGWLAQHLDQLPGSGIVYTLTVAAAVETAAFLTERGHDVRAYTGQTDPQERARAEEDL
LANRTKALVATSALGMGFDKPDLGFVVHLGAPQSPVSYYQQIGRAGRGLPRAEAVLLPGA
EDREIWRYFAGLAFPEEETVRHTLAVLAEADGPLSLPRLETRVDLGRGRLEQMLKVLDVD
GAVRRERSGWTATGRPWTYDTARYAAVAAAREAEQRAMLDYIATGTCRMEFLRRQLDDPE
AAPCGRCDNCTGRAWPTRVDPEAHRAAGAHLDRPGVPIEPRKRWPTGMAALGVDLSGAIP
AGLRAEEGRALARLTDIGWGTTLRRLLAEDAPDEPVDDAVFRAVVDVLAAWPWRQRPAGV
AAMPSRRRPRMITDLARRLCEAGRLTPVGVIGYRTPEGAGPRRHNSAQRLASLWDAFTLD
PALRQRVAALDGPVLLVDDQTDTGWSLTVAAARLREAGAAAVLPLTLASRT
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggccacaccagcgctccccgagaccgaccccgccctgcgcgacaccgcggaggcccac
ctgcgcgccctcgccggagccgacgcccgcctgcgcgaggaccagtggcgggccgtccac
gccctcgccgcccagcaccggcgcgtcctcatggtgcaacgcaccggatggggcaagtcc
gcggtctacttcgtggccaccgcgctgcgccgcgccgcgggagccggacccaccgtcatc
gtctccccgctgctggcactcatgcgcaaccagatcgccgccgccgagcgcgccggaatc
cgcgcccacaccgtcaacagcaccaaccccgaggagtgggagcgcacctacgccgcggtc
gccgagggcgccgtcgacgtgctgctgatcagccccgaacgcctcaaccaccccgagttc
cgcgaccgcgtcctgcccggcctggccgccggagccggactggtcgtcatcgacgaggcc
cactgcatctccgactggggccacgacttccgccccgactaccggcgcatccgcaccctg
ctgggcgaactgccccccggcgtcccggtgctggccaccaccgccaccgccaacgcccgc
gtcacccgcgacgtcgccgaacaactggagaccggcgacgacacccccaccctcgtcctg
cgcggcagcctcgaccgcgagagcctgcacctggccgtggtccgcctccccgacagcgcc
gcccgcctcggctggctcgcccagcacctcgaccagctccccggctccgggatcgtctac
accctcaccgtcgccgcggccgtcgagaccgccgccttcctcaccgaacgcggccacgac
gtgcgcgcctacaccggacagaccgacccgcaggagcgcgcccgcgccgaggaggacctg
ctggccaaccgcaccaaggccctggtcgccaccagcgccctgggcatgggcttcgacaag
cccgacctcggcttcgtggtgcacctgggcgcaccgcagtccccggtctcctactaccag
cagatcggccgggccggacgcggcctgccccgcgccgaggcggtcctgctgcccggcgcg
gaggaccgggagatctggcggtacttcgccggcctcgccttccccgaggaggagaccgtc
cgccacaccctcgcggtgctcgccgaagcggacgggcccctctccctgccgcgcctggaa
acccgcgtggacctgggacgcggccgactggagcagatgctcaaggtgctcgacgtcgac
ggcgcggtccgccgggagcgcagcggctggaccgccaccggacgcccctggacctacgac
accgcccgctacgccgccgtcgccgccgcccgcgaggccgagcagcgcgccatgctcgac
tacatcgccaccggcacctgccggatggagttcctccgccgccagctcgacgaccccgag
gccgccccctgcggccggtgcgacaactgcaccgggcgcgcctggcccacccgcgtcgac
cccgaggcccaccgcgccgccggcgcccacctggaccgccccggcgtgccgatcgagccg
cgcaagcgctggcccaccggcatggccgcgctcggagtggacctgtccggggccatcccg
gccgggctgcgggccgaggagggccgcgccctggcccgcctcaccgacatcggctggggc
accacgctgcgccgcctgctcgccgaggacgcccccgacgaacccgtcgacgatgccgtg
ttccgggccgtggtcgacgtcctggcggcctggccgtggcgacaacggcccgccggagtg
gcggcgatgccctcgcgccgccgcccccgcatgatcaccgacctggcccgccgactgtgc
gaggccggccgcctcacccccgtgggcgtcatcggctaccgcacccccgagggcgcggga
ccgcggcgccacaacagcgcccagcggctcgcgtcgctgtgggacgccttcaccctcgac
ccggccctgcggcagcgggtggccgccctcgacggcccggtgctgctggtcgacgaccag
accgacaccggatggtccctcaccgtggccgcggcccggctccgcgaggcgggggccgcg
gcggtcctgccgctgaccctggccagccggacgtga
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