Thermobifida alba: FOF52_10840
Help
Entry
FOF52_10840 CDS
T08159
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
talx
Thermobifida alba
Pathway
talx00040
Pentose and glucuronate interconversions
talx01100
Metabolic pathways
talx02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
talx00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
FOF52_10840
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
FOF52_10840
Enzymes [BR:
talx01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
FOF52_10840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
F5_F8_type_C
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
UPT21394
LinkDB
All DBs
Position
complement(2462187..2463731)
Genome browser
AA seq
514 aa
AA seq
DB search
MGRSIARRLVSTLATAALVTAGLALPMASASAQTGSATGYAAQNGGTTGGAGGQRVRATT
GTQIHQALCARPSTSTPIIIEVEGTINHGNTSKVSGSGCDTADDVIELKKVSNVTIVGVG
RGAVFDQLGIHIRESRNIIIQNVTIRNVKKSGSPTSNGGDAIGMEKDVRNVWVDHVTLEA
SGGESQGYDGLFDLKNNTQYVTLSYSILRNSGRGGLVGSSESDRSNSYITYHHNLYENID
SRAPLLRGGVAHMYNNHYVGLNKSGINSRAGARAKVENNYFKNSKDVLGTFYTNERGYWE
VRGNIFDNVTWSSQGNENYPAGPNPQSTTSVSIPYSYRMDDAGCVPQVVAQTAGANKGNR
VSDGNCRSQDPGPGDPGPGDPGPGDPGPGDPNPGGPNLSLGAGADGSSKASGTSYGNVID
GNMSTYWSPSGSTGRISVKWGSTTTVSAINIREAAGAEGNIGSWRVVNNDTGAVLATGSG
AGVITFAPTTLRKINFEITSSNGTPRVAEFETYG
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgggacgatccattgcgcgtcgactcgtgtcgacgctggccactgcggccctggtgacc
gctggtctggccctgccgatggcctcggcgtcggcgcagaccggcagcgccacgggttac
gcggcccagaacggtggcaccaccggcggcgcgggcggacagcgggtgcgggccaccacc
gggacccagatccaccaggccctgtgcgcacggcccagcaccagcaccccgatcatcatc
gaggtcgaaggaaccatcaaccacggcaacacctccaaggtgtcgggaagcggttgcgac
accgccgacgacgtgatcgagctcaagaaggtcagcaacgtcacgatcgtcggcgtcggc
cgcggagccgtgttcgaccagctgggcatccacatccgggagtccaggaacatcatcatc
cagaacgtgaccatccggaacgtcaagaagtccggctctcccacctccaacggcggtgac
gccatcgggatggagaaggacgtccgcaacgtctgggtggaccacgtcaccctggaggcc
tcgggcggggagtcgcagggctacgacggcctcttcgacctgaagaacaacacccagtac
gtcaccctctcctacagcatcctgcgcaactccggccgcggcggcctggtcgggtccagc
gagagcgaccgctccaacagctacatcacgtaccaccacaacctgtacgagaacatcgac
tcgcgtgcccccctgctgcgcggcggcgtggcgcacatgtacaacaaccactacgtgggg
ctgaacaagtccggcatcaactcccgtgccggggcccgcgcgaaggtggagaacaactac
ttcaagaactccaaggacgtcctgggcaccttctacaccaacgagaggggctactgggag
gtccggggcaacatcttcgacaacgtgacctggtccagccagggcaacgagaactacccc
gccggccccaacccgcagtccaccacgtcggtgagcatcccgtactcctaccggatggac
gacgccggctgcgtgccgcaggtcgtggcgcagaccgcgggcgccaacaagggcaaccgg
gtctcggacggcaactgccggtcgcaggacccggggccgggcgatcccggccccggtgac
cccggtcccggcgacccgggcccgggcgacccgaaccccggcggccccaacctcagcctc
ggggccggcgccgacggctccagcaaggccagcgggaccagctacggcaacgtcatcgac
ggcaacatgagcacctactggtcgccgagcggctcgaccggtcgcatctcggtcaagtgg
ggctccaccaccacggtgtcggcgatcaacatccgcgaggcggccggggccgagggcaac
atcggctcctggcgggtcgtcaacaacgacaccggagctgtcctggccaccggcagcgga
gcgggcgtcatcaccttcgccccgacgacgctgcgcaagatcaacttcgagatcaccagc
tcgaacggcacaccgcgcgtcgcggagttcgagacctacggttaa
DBGET
integrated database retrieval system
