Thermobifida alba: FOF52_11920
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Entry
FOF52_11920 CDS
T08159
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
talx
Thermobifida alba
Pathway
talx03030
DNA replication
talx03430
Mismatch repair
talx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
talx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOF52_11920
03430 Mismatch repair
FOF52_11920
03440 Homologous recombination
FOF52_11920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
talx03032
]
FOF52_11920
03400 DNA repair and recombination proteins [BR:
talx03400
]
FOF52_11920
Enzymes [BR:
talx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FOF52_11920
DNA replication proteins [BR:
talx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FOF52_11920
DNA repair and recombination proteins [BR:
talx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FOF52_11920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
UPT23492
UniProt:
A0ABY4LBJ5
LinkDB
All DBs
Position
complement(2711115..2712050)
Genome browser
AA seq
311 aa
AA seq
DB search
MRIGALTRRRSGCRARDLEYAVVDVETTGLRPEQGARVCEIAVVRMRGDGTVIREFTTLV
DPRTAVTGQEFHGIADGDVVGAPRSAELVAELRALFSGAVLVGHNLDFENAFLTSEYVPA
GLPGGLPGLCTLRTLRSQVVLERYSLARASHALGGDWPTGQHTALGDARACAQLLAELLR
NAPGPLHYVGPAPVVLTAGPSAARLKPRRSAAGATRLAGPCPRPVPVRPPRPWPRVWRDL
ELDPRLCAGRFGEAERARAVARARAEARARSALLAGAAVTGAAAVAALAAALLRPRLEAW
WAAEARGLTRT
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaataggggcgctgacccggcgccggagcgggtgtcgcgcgcgtgacctggagtac
gcggtggtcgacgtcgagaccaccgggctccggcccgagcagggggccagggtctgtgag
atcgcggtggtgcggatgcgcggggacggcacggtgatccgcgagttcaccacgctcgtc
gaccctcggaccgcggtcaccggtcaggagttccacgggatcgccgacggcgacgtggtg
ggggcgccccgctccgccgagctcgtggcggaactgcgggcgctgttctccggcgcggtc
ctggtgggccacaacctcgacttcgagaacgccttcctcaccagtgagtacgttccggcc
gggctgccggggggcctgccggggctgtgcacgctgcggacgctgcggtcccaggtcgtt
ctggagcgctactcgctggcccgggccagccacgcactcggcggcgactggccgaccgga
cagcacaccgcgctgggggacgcgcgggcctgcgcccaactgctggccgaactgctgcgc
aacgcccccgggccgctgcactacgtggggccggcgccggtggtgctgaccgcggggccg
agtgcggcgcggctcaaaccgcgtcgttcggccgcgggggcgacgcggttggcggggccg
tgcccgcggccggtgccggtgcggccgccgcggccctggccgcgggtctggcgcgatctg
gagttggacccgcggctgtgcgcggggcggttcggtgaggccgaacgggcccgggccgtc
gcccgggcccgcgcggaggcccgggcacgctcggcactgctggccggcgccgcggtcacc
ggtgcggcggcggtcgcggcgctggcggcggccctgctccggccccggctcgaagcgtgg
tgggccgcggaggcgcggggcctcacgcggacctga
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