Thermobifida alba: FOF52_17365
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Entry
FOF52_17365 CDS
T08159
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
talx
Thermobifida alba
Pathway
talx03030
DNA replication
talx03430
Mismatch repair
talx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
talx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOF52_17365 (dnaE)
03430 Mismatch repair
FOF52_17365 (dnaE)
03440 Homologous recombination
FOF52_17365 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
talx03032
]
FOF52_17365 (dnaE)
03400 DNA repair and recombination proteins [BR:
talx03400
]
FOF52_17365 (dnaE)
Enzymes [BR:
talx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FOF52_17365 (dnaE)
DNA replication proteins [BR:
talx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FOF52_17365 (dnaE)
DNA repair and recombination proteins [BR:
talx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FOF52_17365 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HHH_3
MCM10_OB
RNA_pol_I_A49
Motif
Other DBs
NCBI-ProteinID:
UPT22508
LinkDB
All DBs
Position
complement(3931395..3934955)
Genome browser
AA seq
1186 aa
AA seq
DB search
MTNDPFVHLHVHTEYSMLDGAAKLKPLFAEAARLGMPAVAMTDHGNMFGSYEFWQTSKGT
GVKPIIGIEAYVAPESRFHKQRVFWGQGKTGDDAAEGGKDVSGGGRYLHMTMWAKNAKGL
RNLFRLSSLASIEGYYTKPRMDLDLMAQYSEGIMVTTGCPSGGVQTRLRLGQEREAIEYA
GKLQDIFGRDSVFLELMDHGIDIEREVRSGLLSVGRKLGLRPLVTNDSHYVTEDQAAAHD
ALLAVGVGKNLDDPTRFRFNGTGYYLKSADEMRDLNHFDEWAEGCRNTLWIAEQVEDGAY
DEVFQPRDLMPKFPVPEGETQASWLRKEVERCIPSRFPDGPDRETRERIEYELNVIEKMG
FPAYFLVVADICQYARRSGIALGPGRGSAAGSMIAYILGITDLNPMPYGLLFERFLNPER
VSMPDIDLDFDERKRGDMIRYVTERYGEERVAQILTFGTIKAKAAIKDATRILGYPYALG
DKITKAFPPAVMGKEIPLSAVFDESHPRYHEAVELRQLIESDPDVRKVYETASGLEGLTR
GTGVHAAGVILSSEPLLDVIPLHKRDTDGAIITGFPYPQCEEMGLLKMDFLGLRNLTIID
DAVQSVKANEGKELDLANLPLDDKKTYELLSRGDTLGVFQFDGGPMRALLKRMQPKYFSD
ISAVSALYRPGPMAANAHNDYADRSNGRQEVTPIHPELKEALDPILSETYHLLVYQEQIM
AIAQQLAGYTLGGADLMRRAMGKKKKEVLEKEYETFRSGMLERGFSAEAIQTLWDVMLPF
SGYAFNKSHSAAYGVVSYWTAYLKANHPASYMAALLTSVGDDKDKMAVYLAECRKMGIRV
LPPDVNESGLRFTPVGSDVRFGMGAVRNVGANVVESIIKTREEKGKFTSFVDFLSKIELA
VCNKRVIESLIKAGAFDSLGHSRLDLYRHHEAAVDAVITSKKQEANGQFDLFGGDDEEEG
AAPIGLTINWTGEEWDRKTKLAFEREMLGLYVSSHPLAGAERILARSRDASLLEVVNGER
RNNDEVRIAGLISKVEKRINKAGNQWAIATIEDLDASIEALFFPKTYPLYVDALVEDTAV
TVKGRLNDREGTYSIFVSEMSILDISHVSEGEPPVLLTIPEKRITRELINDLKQALRSHR
GDTPVRIRVDNPLRSRIFAVDDYPVRVSPEFSGEIKGILGPEAITY
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaacgatcccttcgtccacctgcacgtccacaccgagtactcgatgctggacggg
gctgccaagctcaagccgctgttcgccgaggcggcccggctgggcatgcccgccgtggcg
atgaccgaccacggcaacatgttcggctcctacgagttctggcagacctccaagggcacc
ggggtcaagccgatcatcgggatcgaggcgtacgtggcgcccgagtcccgcttccacaag
cagcgggtgttctgggggcagggcaagaccggcgacgacgcggccgagggcggcaaggac
gtctccggcggcggccgctacctgcacatgaccatgtgggcgaagaacgccaaggggctg
cgcaacctcttccggctgtcgtccctggcctccatcgagggctactacaccaaaccgcgc
atggacctggacctgatggcccagtacagcgagggcatcatggtcaccaccggatgcccc
tccggcggcgtgcagacccggctgcggctcggccaggaacgcgaggccatcgagtacgcg
ggcaagctccaggacatcttcggccgcgactcggtgttcctggagctgatggaccacggc
atcgacatcgaacgcgaggtccgctccggcctgctgtccgtcggcaggaaactgggcctg
cgccccctggtcaccaacgactcccactacgtcaccgaggaccaggccgccgcgcacgac
gcgctgctggccgtgggcgtcggcaagaacctcgacgaccccacccgcttccggttcaac
ggcaccggctactacctcaagagcgccgacgagatgcgcgacctcaaccacttcgatgag
tgggccgagggctgccgcaacaccctgtggatcgccgagcaggtcgaggacggcgcctac
gacgaggtgttccagccccgcgacctgatgcccaagttcccggtgccggagggcgagacc
caggcgagctggctgcgcaaggaggtggagcgctgcatccccagccggttccccgacggg
cccgaccgggagacgcgtgaacgcatcgagtacgagctgaacgtcatcgagaagatgggg
ttccccgcctacttcctcgtcgtcgccgacatctgccagtacgcgcgccgctccgggatc
gcgctgggcccggggcggggctccgccgccgggtcgatgatcgcctacatcctcggcatc
accgacctcaacccgatgccctacggcctgctgttcgagcggttcctcaaccccgaacgc
gtgtcgatgcccgacatcgacctggacttcgacgagcgtaagcgcggcgacatgatccgc
tacgtcaccgaacgctacggcgaggagcgggtcgcgcagatcctcaccttcggcaccatc
aaggccaaggcggccatcaaggacgccacccgcatcctcggctacccctacgcgctcggc
gacaagatcaccaaggcgttcccgcccgccgtcatgggcaaggagatcccgctctccgcg
gtcttcgacgagtcgcacccccgctaccacgaggcggtcgagctgcgccagctcatcgag
tccgacccggacgtccgcaaggtctacgagaccgccagcggtctggagggcctgacccgg
ggcaccggtgtgcacgccgcgggcgtcatcctctcctccgagccgctgctcgacgtcatc
ccgctgcacaagcgcgacaccgacggcgccatcatcacgggcttcccgtacccccagtgc
gaggagatgggcctgctgaagatggacttcctgggcctgcgcaacctgacgatcatcgac
gacgcggtgcagagcgtgaaggccaacgagggcaaggaactcgacctggcgaacctgccg
ctggacgacaagaagacctacgaactgctgtcccgcggcgacaccctcggcgtcttccag
ttcgacggcggtcccatgcgcgcgctgctcaagcgcatgcagcccaagtacttcagcgac
atctccgcggtcagcgcgctgtaccggcccggtccgatggccgccaacgcgcacaacgac
tacgccgaccgctccaacggacgccaggaggtcaccccgatccacccggagctgaaggag
gctctggacccgatcctctccgagacctaccacctgctcgtctaccaggagcagatcatg
gcgatcgcccagcagctcgccgggtacacgctgggcggcgcggacctgatgcgccgcgcg
atgggcaagaagaagaaggaggtcctggagaaggagtacgagacgttccgttcgggcatg
ctggagcgcggcttctccgcggaggccatccagacgctgtgggacgtcatgctcccgttc
tccggctacgccttcaacaagtcgcactccgccgcctacggcgtggtctcctactggacc
gcctacctcaaggccaaccatcccgcgtcctacatggcggcgctgctcacctcggtgggc
gacgacaaggacaagatggccgtctacctggccgagtgccgcaagatgggcatccgggtg
ctgccgcccgacgtcaacgagtcgggcctgcggttcaccccggtcggcagcgacgtccgc
ttcggcatgggcgcggtccgcaacgtgggcgccaacgtcgtggagtccatcatcaagacc
cgcgaggagaaggggaagttcacctccttcgtggacttcctgtccaagatcgaactggcc
gtctgcaacaagcgcgtcatcgagtcgctgatcaaggcgggcgcgttcgactcgctcggc
cactcgcgcctggacctgtaccgccaccacgaggcggcggtcgacgccgtcatcacctcc
aagaagcaggaggccaacggtcagttcgacctgttcggcggggacgacgaggaggagggg
gccgcgccgatcggcctcaccatcaactggaccggcgaggagtgggaccgcaagaccaaa
ctcgcgttcgagcgggagatgctggggctgtacgtgtccagccacccgctggcgggcgcc
gaacgcatcctggcgcggtccagggacgcctccctgctggaggtcgtcaacggcgagcgc
cgcaacaacgacgaggtacgcatcgcgggcctgatctccaaggtggagaagcgcatcaac
aaggcgggcaaccagtgggcgatcgccacgatcgaggacctcgacgcctcgatcgaggcg
ctgttcttccccaagacctacccgctgtacgtggacgccctggtggaggacaccgcggtc
accgtcaaggggcggctcaacgaccgggagggcacctattcgatcttcgtgtcggagatg
tcgatcctggacatctcccacgtctccgagggggagcccccggtcctgctcacgatcccg
gagaagcggatcaccagggagctgatcaacgacctcaagcaggcgctgcgcagccaccgc
ggcgacacgccggtgcggatccgggtggacaacccgctgcggtcgcggatcttcgcggtc
gacgactacccggtgcgggtcagccccgagttctccggtgagatcaagggcatcctgggg
cccgaggcgatcacctactga
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