Thermobifida alba: FOF52_20460
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Entry
FOF52_20460 CDS
T08159
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
talx
Thermobifida alba
Pathway
talx03420
Nucleotide excision repair
talx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
talx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOF52_20460
03430 Mismatch repair
FOF52_20460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
talx03400
]
FOF52_20460
Enzymes [BR:
talx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOF52_20460
DNA repair and recombination proteins [BR:
talx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOF52_20460
MMR (mismatch excision repair)
Other MMR factors
FOF52_20460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UPT23020
LinkDB
All DBs
Position
4595972..4599295
Genome browser
AA seq
1107 aa
AA seq
DB search
MTDVYGPAQLARLLGLPEPTPEQAAVIAAPLRPGLVVAGAGSGKSETMAARVVWLVANGH
VRPEHVLGLTFTRKAAAELAERVRKRLDQLRGAGAVPDEVLDGEPTVATYHSYAIRLVGD
HALREAVEPNTRLVSPAVAWQLAHRVVSTYDGPMDAVTSAPSTVVRDVLALAGELAEHLR
TPDDVREFGSWLRSRAAGLKKIPAPVRDLLATQNHREQLLPLLERFAQLKADREVMDYDD
QIALAARIAQRHPEVGLIERGRYQVVLLDEYQDTSHAQLVLLRSLFGDGHPVTAVGDPCQ
SIYGWRGASAGNLVSFPTHFPERPGRPAAVRQLSTSFRNGERVLEVAKRIAEPLRAEAED
VPVLYPGPARVGRGRVTCALLRTETEEAAWIAEQIDLALRESADRHTAPDGLPWPEQEAR
GPLGYGDVAVLCRKRSQFPVIRHALEERGIPVEVVGLGGLIEVPEVRDIVATLRVLHDPT
AGHELARLLTGPRWRLGPRDLVALNKRAVELAREARRDLRGPAAQEAEEEADPLRRTVLD
LTAETGSLVDALDDLGPAERYSEAGYRRLRALAEELRTLRGQVAQPLPDLITEVERVLGL
DVEVGARPGRDQAAARADLDAFVDAAVRFSGSTDAPTLHAFLAYLDSAEDTEHGLAPGER
IGSSDTVKLMTVHAAKGLQWPVVVVPGLSQGQFPGVARTVKSWTGKAAELPFALRGDRAG
LPDLPDVTAEDLKRFTAAERDRELMEQRRLAYVAVTRAAFALLCTGHWWGRQAQRRRGPS
VFLEEVREVCEAGAGRVALWTDPPGDDEHNPELVEDAPVVWPSDGDTRRDAAARAADLVT
RYRNGAWERELGLLDRAVLRPAARRRIRDWARDVELLLRHRAAEPHDGRAVEVELPAHLT
VSALVSLARDPAALARQIRRPLPRPPAPHTRRGTAFHTWLERRFGQQSLVDPDELPGAAD
GPVDVDTELEELQRRFEQSEWADRTPLDVEVSFETGIGDRLVRGRMDAVFHDPENDVYDV
VDWKTGQPPTTARERRAVAVQLAAYRVAWARIADVPLDRVRAAFHYVRHDETVRPADLLD
AAGLAALINAVPEPGAGPGDGDGPADG
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtctacggacccgcgcagctcgcgcggctgctcgggttgcccgaacccacc
ccggagcaggccgccgtcatcgccgcaccgctgcgtcccgggctggtggtggccggggcc
ggctccggcaagagcgagaccatggccgcccgggtggtgtggctggtcgccaacgggcac
gtgcgccccgagcacgtgctcggcctcaccttcacccgcaaggccgccgccgaactcgcc
gaacgcgtccgcaaacggctcgaccagctgcgcggcgcgggcgcggtgcccgacgaggtg
ctcgacggcgaacccaccgtcgccacctaccactcctacgccatccgcctggtcggcgac
cacgcgctgcgcgaggccgtggaaccgaacacccgcctggtctccccggccgtggcctgg
cagctcgcccaccgcgtggtcagcacctacgacgggccgatggacgcggtcacctccgcc
ccctccaccgtggtccgcgacgtcctcgccctggccggggaactcgccgaacacctgcgc
acccccgacgacgtgcgcgagttcggctcctggctgcgttcgcgcgccgcgggcctgaag
aagatccccgcccccgtccgcgacctgctcgccacccagaaccaccgcgagcagctgctc
ccgctgctggagcggttcgcccagctcaaggcggaccgcgaggtgatggactacgacgac
cagatcgcgctggccgcccgcatcgcgcagcgccaccccgaggtcggcctgatcgaacgc
ggccgctaccaggtggtgctgctcgacgagtaccaggacaccagccacgcccagctcgtg
ctgctgcggtcgctgttcggagacggccacccggtcaccgcggtcggcgacccctgccag
tccatctacggctggcgcggcgccagcgcgggcaacctggtcagcttccccacccacttc
ccggagcggcccggcaggcccgcggcggtccgccagctgtccaccagcttccgcaacggc
gaacgggtgctggaggtcgccaagcgcatcgccgagccgctgcgcgccgaggccgaggac
gtccccgtgctctacccggggccggcgcgcgtcggccggggccgggtcacctgcgccctg
ctgcgcaccgagaccgaggaggccgcctggatcgccgagcagatcgacctggcgctgcgg
gagtcggcggaccggcacaccgcgcccgacggcctgccctggcccgaacaggaggcccgg
gggccgctcggctacggcgacgtcgcggtgctgtgccgcaaacgctcccagttccccgtg
atccgccacgcgctggaggagcgcggcatccccgtcgaggtcgtcgggctgggcgggctc
atcgaggtgcccgaggtgcgcgacatcgtcgccaccctgcgggtgctgcacgaccccacc
gccgggcacgaactcgcccggctgctcaccgggccgcgctggcggctggggccgcgcgac
ctggtcgcgctcaacaagcgcgccgtggagctggcccgggaggcccgccgcgacctgcgc
ggcccggccgcgcaggaggccgaggaggaggccgacccgctgcggcggaccgtgctggac
ctgaccgccgagacgggaagcctcgtcgacgcgctcgacgacctcggccccgccgaacgc
tactccgaggcgggctaccggcggctgcgcgccctcgccgaggagctgcggacgctgcgc
ggccaggtcgcccaaccgctgcccgacctgatcaccgaggtggagcgggtcctcggcctc
gacgtggaggtgggcgcacggcccggccgggaccaggccgccgcccgcgccgacctggac
gcgttcgtggacgccgcggtgcgcttctccggctccaccgacgcgcccaccctgcacgcg
ttcctcgcctacctggactccgccgaggacaccgagcacggcctggcccccggcgagcgg
atcggttccagcgacaccgtcaaactcatgacggtgcacgccgccaaggggctgcagtgg
ccggtggtggtcgtgcccgggctcagccagggccagttccccggggtcgccagaaccgtg
aagagctggaccggcaaggccgcggaactgccgttcgcgctgcgcggcgaccgggcgggc
ctgcccgacctgccggacgtgaccgccgaggacctcaagcgcttcaccgcggccgaacgc
gaccgcgagctgatggagcagcgccgcctcgcctacgtggcggtgacccgcgccgcgttc
gcgctgctgtgcaccgggcactggtgggggcggcaggcccagcgcagacgcggcccctcg
gtcttcctggaggaggtgcgggaggtgtgcgaggcgggcgcgggccgcgtcgcactgtgg
accgacccgcccggcgacgacgagcacaaccccgaactggtcgaggacgcccccgtggtc
tggccgtcggacggggacacccgccgcgacgccgccgcacgggccgccgacctggtgacg
cgctaccggaacggggcctgggaacgggagttgggcctgctggaccgcgccgtgctgcgg
ccggcggcgcgccgccggatccgcgactgggcgcgcgacgtggagctgctgctgcgccac
cgcgccgccgagccgcacgacgggcgggccgtcgaggtggagctgcccgcccacctgacc
gtgtccgcgctggtgtcgctggcccgcgaccccgccgcgctggcccggcagatccgccgt
ccgctgccgcggccgccggcgccgcacacccgccggggcaccgccttccacacctggctg
gaacggcgcttcggccagcagagcctggtcgaccccgacgaactgcccggcgccgccgac
ggccccgtggacgtcgacaccgagctggaggagttgcagcgccgtttcgagcagagcgag
tgggccgaccgcaccccgctggacgtggaggtctccttcgagaccggcatcggcgaccgg
ctggtgcggggccggatggacgcggtcttccacgacccggagaacgacgtctacgacgtg
gtggactggaagaccgggcagccgcccaccacggcccgggagcgccgcgcggtggccgtg
caactggccgcctaccgggtggcctgggcccggatcgccgacgtgcccctggaccgggtg
cgcgccgccttccactacgtccgccacgacgagacggtccgccccgcggacctgttggac
gccgcgggcctggccgcgctcatcaacgcggtccccgaacccggagcgggaccgggggac
ggggacgggccggcggacggctga
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