Tardiphaga alba: RPMA_15365
Help
Entry
RPMA_15365 CDS
T09683
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
talz
Tardiphaga alba
Pathway
talz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
talz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPMA_15365 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
talz03400
]
RPMA_15365 (mfd)
Enzymes [BR:
talz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPMA_15365 (mfd)
DNA repair and recombination proteins [BR:
talz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RPMA_15365 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QUS40053
UniProt:
A0ABX8ACA5
LinkDB
All DBs
Position
complement(3293484..3297005)
Genome browser
AA seq
1173 aa
AA seq
DB search
MKSPVASPASQLLPGKALTFANVSEGAEGLIVADLARAVAAKPKPPAVSLAVVCRDGPRM
QQLARALQFFAPDLPVLQFPAWDCQPYDRVSPFAGVLAQRMTALAQLSRLTGSDKPMIVL
TTVNAMVQRVPTRDIVAAQALSVAPGNVVPMDNIVAWLEHNGYSRSSTVREPGEYAVRGG
ILDLFPAGLEMPVRFDFFGDSLESIRTFDAETQRTELTMRGLDLVPVSEFQLITETIRRF
RMGYVAEFGAPERDDQLYEAVSEGRRHPGMEHWLPLFQEKMDTLFDYFDRTPIVMQSLAE
DAASERFKQIQDYYEARKDAMGMAGGGAIYKPLPPDRLYLSEDEWKQRLRERAVARLSPF
AVPEGTADTVDAGARQGRDFAPERADSSVNVFERVVAHIQSLQSARKKVVVALWSEGSRD
RMASMLKDHKLLNLQMVNSWRAVNAVPRNEASLAVVGMESGFETDNVAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLSAGDIVVHVEHGIGRFVGLQTLEVGGAPHDCLELRYANET
KLYLPVENIELLSRYGSDQTNVELDKLGGSGWQARKAKLKNRIQEIAGELIKIAAERHLR
ETEKISIPREQYDEFCARFPYEETEDQQNAIDAALHDLESGKPMDRLICGDVGFGKTEVA
MRATFGVAMEGKQVAVVVPTTLLARQHAKNFAERFRGFPVNVAQASRLVTPKELSATKKG
LADGSVDIVVGTHALLGKSIKFKDLGLVVVDEEQHFGVTHKERLKQLRANVHVLTLSATP
IPRTLQLALTGVRDLSIIASAPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IEDLAGVKDFLDKHVPEMKVAVAHGQMAPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIIHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITGQAERRLKVLQSLEN
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAILALKSGISEPIADRW
SPSITLGMPVMIPDDFVADLSVRLSLYRRLADLDTDEEIESFAAELRDRFGVLPDEVRYL
FKIAAIKSYCRRANVEKVDAGPKGMSLVFRDNSFAEPEKLVAFIRRYGAAAKVRPDMKVV
FLQEWDTPEDRLEGATDILRDLANLAESGKKAA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctcctgttgcctcgccggcctcgcagctcctgcccggcaaggcgctgaccttt
gccaatgtgagcgaaggcgccgaaggcctgatcgttgccgatctcgcccgtgccgtcgcc
gccaagccgaagccgccggcggtgagcctcgcggtcgtgtgccgcgacggcccgcgcatg
cagcagcttgcgcgcgcgctgcaattcttcgcgccggatctgccggtgctgcaattcccg
gcctgggactgccagccttacgaccgcgtctcgcccttcgccggcgttctcgcccagcgc
atgacggcgctggcgcagctgtcgcgcctcaccggcagcgacaagccgatgatcgtgctg
accaccgtgaacgccatggtgcagcgggtgccgacacgcgacatcgtcgcggcgcaggcg
ctgtcggtggcgccgggcaatgtggtgccgatggacaacatcgtcgcctggctcgaacac
aacggctacagccgctcctccacggtgcgcgagcccggtgaatatgccgtccgcggcggc
atcctcgatctgtttcccgccgggctggaaatgcccgtgcggttcgactttttcggcgac
agcctggaatccatccgcaccttcgatgccgaaacgcagcgcaccgaactcacgatgcgt
ggcctcgatctcgtgccggtgtccgaattccagctcatcaccgagaccatccgccgcttc
cgcatgggctatgtcgccgaattcggcgcgcccgagcgagacgaccagctctatgaggcc
gtcagcgaaggccgtcgccatcccggcatggagcattggctgccgctgttccaggagaag
atggacacgctgttcgattatttcgatcgcacgcccatcgtgatgcagtcgctggccgaa
gacgcggccagcgagcgcttcaagcagatccaagattattacgaggcccgcaaggacgcc
atgggcatggccggcggcggcgccatttacaagccgttgccgccggaccggctgtatctc
tccgaagacgagtggaagcagcggctgcgcgagcgcgccgtggcgcggctgtcgccgttt
gcggtgcctgagggcactgcggatacggttgatgccggtgcgcggcaaggccgcgacttc
gcgccggagcgtgccgacagttccgtcaacgtgttcgaacgtgtcgttgcgcatatccag
tcgctgcaatcggcgcgcaagaaggtggtcgtggcactctggagcgaaggctctcgcgac
cgcatggcgagcatgctcaaggatcacaagctgctcaatctgcagatggtgaattcctgg
cgtgccgtgaacgccgtgccgcgcaacgaggcgtcgctggccgtggtcggcatggaatcg
ggcttcgagaccgataacgtcgccgtcatcagcgagcaggacattctcggcgatcgcctc
gtgcgcccgcgcaaggcgagccgcaaactcgataatttcatatccgaagtcacctcgctt
tcggccggcgatatcgtggttcatgtcgagcacggcatcggccgcttcgtcggcctgcag
acgctcgaagtcggcggagcaccgcatgactgtctcgaactgcgctacgccaacgagacc
aagctctatctgccggtcgagaatatcgagctgctgtcgcgctacggctccgaccagacg
aatgtcgaactcgacaaactcggcggctccggctggcaggcccggaaagcaaaactcaag
aaccgcattcaggaaatcgccggcgaactcatcaagatcgcggccgagcgccatctgcgc
gagaccgaaaagatctcgatcccgcgcgagcagtatgacgaattctgcgcgcgcttcccc
tatgaggaaaccgaggatcagcagaacgccatcgacgcggcgctgcatgatctcgaaagc
ggcaagccgatggatcgcctgatctgcggcgatgtcggcttcggcaagacggaagtcgcc
atgcgcgccacctttggcgtcgcgatggaaggcaagcaggtcgccgttgtggtgccgacc
acgctgcttgctcgtcagcacgccaagaactttgccgagcgtttccgcggtttccccgtg
aatgtcgcgcaggcctcgcgcctggtgacgccgaaggaactgtcggccacgaagaaaggc
ctcgccgatggttccgtcgatatcgtcgtcggcacccatgcgctgctcggcaagtcgatc
aagttcaaggatctcggccttgtcgtggtggacgaggaacagcattttggcgtgacgcat
aaggagcggctcaagcagctccgtgccaatgttcatgtgctgacgctctcggcaacgccg
atcccgcgtacgttgcagcttgcgctgaccggcgtgcgcgatctctcgatcatcgcctcg
gcgccggtcgatcgtctcgccgtccgcaccttcgtggcgccgcacgatccgctgatgatc
cgcgaagcgctgctgcgcgaacgctatcgcggcgggcaggccttctatgtcgtgccgcgt
atcgaggatctcgccggggtgaaggatttcctcgacaagcatgtgccggagatgaaagtc
gccgtggcccatggccagatggcgccgaccgtcatcgaggatatcatgtcggccttctat
gacggcaaatacgacatcctgctgtccaccacgatcgtggaatccggcctcgatatcccg
aatgccaatacgctgatcatccaccgcgccgatatgttcggtctcgcgcagctctatcag
ctgcgcggccgtgtcggccgttccaagctgcgcgcctatgcgctgttcacgctgccggcg
cagcagaagatcaccgggcaggcggagcgtcgcctgaaggtgctgcagtcgctggaaaac
ctcggcgcaggattccagctggcgtcgcacgatctcgacatccgcggcgccggcaatctg
cttggcgaggagcagtccggccatatcaaggaagtcggtttcgaactgtaccaatcgatg
ctggaagaggcgatcctcgcgctcaagtccggcatctccgagccgatcgccgacaggtgg
tcgccgagtattacgctgggcatgccggtgatgatccccgacgatttcgtcgccgatctg
tcggtgcggctatcgttgtatcgtcgtctcgccgatctcgacaccgacgaggagatcgag
agctttgccgccgaactgcgcgaccgttttggcgttctaccggacgaggtgcgttacctc
ttcaagatcgccgcgatcaaatcctattgccgccgcgccaatgtcgagaaggtcgatgcc
ggcccgaagggcatgtcgctggtcttccgcgacaacagctttgccgagccggaaaaactg
gtggccttcatccgtcgttacggcgctgcggcgaaggtacgcccggacatgaaggtggtg
ttcctgcaggaatgggatacgccggaagatcgcctcgaaggcgcgacggatatcctgcgt
gatctcgcaaacctcgcggagagcggcaagaaggcggcgtga
DBGET
integrated database retrieval system
