Tardiphaga alba: RPMA_26520
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Entry
RPMA_26520 CDS
T09683
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
talz
Tardiphaga alba
Pathway
talz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
talz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPMA_26520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
talz03400
]
RPMA_26520
Enzymes [BR:
talz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPMA_26520
DNA repair and recombination proteins [BR:
talz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RPMA_26520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
Cas3-like_C_2
AAA_22
SecA_DEAD
DUF416
HolB_lid
AAA_30
DUF7739
Motif
Other DBs
NCBI-ProteinID:
QUS41987
LinkDB
All DBs
Position
complement(5608573..5611887)
Genome browser
AA seq
1104 aa
AA seq
DB search
MSGMQSKPPKSSTAKTRSRSFSPSPPPISSDAPLGQAALYLLEVWRSACRAGLIFICDDE
RRAEQLGAAVHAFEPSSRVMVLPSLGPTAMDDIEPSPEIAGRRSSVLRRLAEAEGALVIT
TVHALARRVPAPETMLTSALHLSNGGPFAEDKVRSFLTSSGYLLDDRIEAPGTAIFLGNA
LEIFPAGALGPVRIGYEADRVTDIHLYDLMDQRDLEAINAVVIDVVDETSPCGAEKSGGL
GKSRIATTFFDYCPSSIVVVDHGVESLAKRWLGSVDAEKASTVMSFNEWKQSLSRRNAVV
LPETSSGSEPRTFFKEAAPTRAFRLFLQQQQDSGRLVIFTAVSKRDLRSMERRAGLASTL
CPDWKQATAQAKPNRPAAMFADLDCGFAWTDGVVVVAAADLLGSRATHQDIMTVGLRRSI
CDQSLSPGDVVIHMDRGMAILRDLVPLSAAGVPDAEMIRLQFADDDHVLLPLSDLRLIWR
YSSDSDGVSLDKADGSSWLERRSRAEDDIAATAEHIADRVSERQQRRVDPIVPEVADYET
FAAAFDYIPTADQAVAITDVLTDLASDSPMDRLVCGDVGYGKTEVALRAAAAAVFAGKQV
AVAVPTTVLARQHFETFRRRFAPFGIEVGLLSRFTTAAEARAIKATLADGSLSVVIGTHA
LAAKGVEFKDLGVLVIDEEQHFGKVQKSKLEALAEGLNVLTMTATPIPRTLSEVRAGLRA
LSMIATAPVRRVPVMTAVEPFHEATVAAALRREHRRRGQSFVVCPRIEDISPMARRLKDA
APELKTIAVHGKMPAADIDAAMMSFAAGEADILLATNIIESGLDLPRANTIIVWRPDRFG
LAQLHQLRGRVGRRSTRSFALFLTDAENAVSGAAAKRLDTLKNLRDQGAGFLVSAGDMDM
RGGGDLLSDKQSGHIQLLGTELSGHLLDRAMSQADLPPVFDRRPEVNLDIPALLPIPYVK
DAGIRLELYARIFRAERDSQLEELEDEIDERFGQLPTEARNLMGLARFELGCMRLGIASV
DAGPKSLAATFDQQRCADLPKAFDPKTMLEWKDDRLTYRRSAPPSQRLAVLEAFIATIGR
VIATDDDSTQSSRPRKARNPRADA
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcatgcaatccaaaccgccgaagtcgtctacagcgaaaacacggagtcgttca
ttcagcccgtcgcctccgccgatatcgtccgatgctccgttgggtcaggcagcgctctat
ctgctcgaggtctggcgttccgcatgccgcgccggattgatcttcatttgcgatgacgag
cgccgcgcggagcaattgggcgctgccgttcatgcctttgagcccagttcccgggtcatg
gtgctgccaagccttggaccgacggcaatggatgatatcgaaccgtcgccggagatcgca
gggcggcgcagttcggtgctgcgccgtctcgcggaggcggaaggcgcacttgtcatcact
acggtccatgctctcgcaagacgggtgccggcgccggaaaccatgttgacatcggcgctg
cacctttcgaatggtgggccgttcgctgaagacaaggtgcgtagctttctgaccagcagc
ggatatctgcttgatgatcggatcgaagcgcccggcaccgccatctttctcggaaatgcg
cttgaaatttttccggcgggcgctctgggcccggtgcgtatcggatacgaggcagatcgg
gtcacggatatccacctatacgatttgatggatcagagagatctcgaagcaatcaacgcg
gtcgtgatcgacgtggttgacgaaacaagtccatgtggagctgaaaaatccggcggcttg
gggaaatcgcggatcgcgacgacgtttttcgactactgcccgtcttcgatagttgtcgtt
gatcatggcgtggagtcgcttgcgaaacggtggctaggcagtgtcgacgccgagaaggcg
tcgaccgtcatgtccttcaacgaatggaaacagagtctctcgcgtcgcaacgccgttgtc
ctgcccgagacatcttccgggtcagagccgcgaacgttctttaaagaagccgcgccaacg
cgagccttccggctgtttcttcagcaacagcaggatagtggtcgtctggtgatcttcacg
gctgtgtcgaagcgggacctgcggtcaatggagcgacgggcggggttggccagcacccta
tgcccggactggaaacaagccaccgcgcaggcgaagcccaatcgtcctgcagcgatgttt
gccgatctcgattgtggtttcgcctggaccgacggcgtggtcgtcgtggctgcggccgat
ctcctcggtagccgtgcgacgcatcaggacatcatgacggttggtctgcgacgaagtatc
tgtgatcaatcactgtcgccgggcgatgtcgttatccacatggaccgcggcatggccatt
ctgcgcgatctggtccctttgtcggcggccggtgttccggatgcggaaatgatccggctg
caattcgcagacgatgaccacgttttgctgccattatcggatctccgattgatctggcgc
tattcgtcagattccgatggcgtttccctcgacaaggctgacggctcgtcttggctcgaa
cgtcgatcgcgagccgaagacgacattgcggcgacagcggagcacatcgccgaccgcgtg
agcgaacgtcagcaacgccgggtcgatcctatcgtgccagaagtcgcggattacgagacg
tttgctgcggccttcgattacattcccacagccgatcaggctgtggccatcaccgacgtc
ctgaccgaccttgcgtccgatagtccgatggacaggctggtgtgcggtgacgtcggatac
ggcaagacagaagtcgcgctgcgtgcggccgcagcggcggtgttcgcgggaaagcaggtt
gcggtggctgtgccaacgacggtgctggcccgacagcattttgagaccttccgtcgtcgc
ttcgcgcctttcggcattgaggtggggttgctgtcacgcttcacgacggccgccgaggcc
cgcgccatcaaggcgacgttggcggatggctcgctatccgtcgtgatcggaacccatgca
ttggccgccaagggcgtcgaattcaaggacctcggcgtgttagtgatcgacgaggaacag
catttcggaaaagtgcaaaaatccaaactcgaggctctggctgaaggtctgaatgtcctg
accatgacggccactccgatccccagaaccttgagtgaagtacgtgcaggattgcgtgcg
ctcagcatgattgcaacggcgccggtcagacgtgtcccggtcatgaccgccgtcgagcca
tttcatgaagcgactgtcgcggccgcgttgcgccgcgaacatcggcgccgtggacaatcc
tttgtcgtatgcccacggatcgaagatatctcgccaatggcgcggcgtctcaaggacgcc
gcgccggaactgaagacaatcgcggtgcacggcaaaatgccggccgccgatattgatgct
gcgatgatgagtttcgctgcaggtgaagccgacattcttctcgcgaccaacatcatcgaa
agcggcttggatctcccgcgagccaacacgatcatcgtgtggcgtccggacaggttcggc
ctagcgcaattgcaccagttgcgaggccgggtggggcgccgaagcacaagatcgtttgca
ttgtttctgactgacgccgaaaacgccgtttcgggcgcggcggccaagcggttggacacg
ctgaagaatctgcgggaccaaggcgccggcttcttggtcagcgcaggtgacatggatatg
cgcggaggcggagacctgctatcggacaagcagagcggacacattcagcttctcgggacc
gaattgtctggtcatctgctggatcgggcgatgagccaagccgatctaccgccggtgttt
gaccggcgtccggaggtcaatctcgacataccggccttgttaccgatcccctatgtcaag
gatgcaggcattcggctggagctatacgcccgcatcttccgggcggaacgtgacagccag
ttggaagagttggaagacgagatcgacgagcgctttggacaactgccgaccgaagcgcgt
aatcttatgggactggcgcgcttcgaactcggatgcatgcggctcggcatcgcgagcgtc
gatgccggaccaaaatctttggctgccacatttgaccagcaacggtgtgccgatctgccg
aaggcctttgatcccaaaaccatgctcgaatggaaagacgaccggttgacgtatcgccga
tcggcaccgccgtcgcagcgcctggccgttctcgaagcgtttattgccacgattggacgc
gtaattgcgacggatgacgacagcacgcagtcttcgcggccgcgcaaggcccgcaacccg
cgagcggacgcatga
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