Thermovibrio ammonificans: Theam_0582
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Entry
Theam_0582 CDS
T01391
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tam
Thermovibrio ammonificans
Pathway
tam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Theam_0582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tam03019
]
Theam_0582
03016 Transfer RNA biogenesis [BR:
tam03016
]
Theam_0582
Enzymes [BR:
tam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Theam_0582
Messenger RNA biogenesis [BR:
tam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Theam_0582
Transfer RNA biogenesis [BR:
tam03016
]
Prokaryotic type
tRNA degradation factors
Theam_0582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_HELZ2
OB_Dis3
NT-C2
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
ADU96554
UniProt:
E8T5X0
LinkDB
All DBs
Position
complement(534080..536230)
Genome browser
AA seq
716 aa
AA seq
DB search
MDANIEKEFEREKALEEGIFKALHHFNKPLKAREIAKFLGIPPEEREGLRAKLKELARSG
KLVKLRGGKFALPEKMGLVVGKLCVYREGFGFVDPIDGGKGVFVPGRSMAGAMNGDIVAV
EIVKEGREGRREGKIVSVIERAVKKVVGRVEKHKGQCFVVPEDKRIRYDVILTHGDCKNV
ENGDYVVVEIVSYPSETRGPVGKVVENLGKTGPKLDIELIIRKYDLPTEFPPEVLEEAEQ
IPLEVSEEEVKGRVDLRQQLCFTIDGENARDFDDAVAIEKLPNGNYRLFVHIADVSHYVK
PGSALDREAYRRGTSVYFPDRCIPMLPERLSNGICSLNPNVDRLTFTCEMEINKKGMVVD
YKIYESIIHSKARLTYTIAQRILDGDREAIEQFPHVVESLKTMLELAKILNKKRYKRGSL
DFDLPEPVVVLNAEGEPVDIYKAERLWSHRIIEEFMIAANETVAEYMFWTDYPSIYRVHE
SPDREKLQEFLNFVRSLGIRVPAVKNDIQPKLLQKILEQVEGKPEEKLVNYLMLRTMARA
KYSPDNIGHFGLASTYYTHFTSPIRRYADLQLHRLVKMALKGMFKPESIPAWEEKLEVIC
KHVTERSILADEAERDVVELKKLQFAANHIGEVFEAIVTGVTEQGLFVETIEQVIPGFVH
VTNLKNDYYICVPKQYCLVGEKSGTVFRIGDRVLVKLLAVDIENRKAEFEVVKKLK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggacgctaacatcgaaaaggagtttgagagggagaaagctctggaggagggaatattc
aaagccctccaccactttaataaaccccttaaagcgagggagatagcgaagttcctcggc
atacctccggaagagagggaagggctgagggcgaagctgaaagagctcgcaaggagcggg
aagctcgtgaagctccggggcggcaagttcgccctgcccgagaagatggggctcgttgta
gggaagctctgcgtttacagggaaggcttcgggtttgtggacccgatagacggcggtaag
ggagtgttcgtccccggaaggagcatggccggggcgatgaacggcgacatagttgccgta
gagatagtgaaagaagggagagagggccgcagggaagggaagattgtttcggtaatagag
agggccgttaagaaagttgtaggaagggtagaaaagcacaaagggcagtgctttgtagtt
ccggaagacaagagaatcaggtacgacgtaatcctcacccacggcgactgtaaaaacgtg
gagaacggcgattacgtggtggttgagatagtctcctacccttcggagaccaggggaccg
gtgggcaaggtcgttgagaacctcgggaaaaccggtcccaagctggacatagagctgatt
ataaggaagtacgacctgcctacagagttcccgccggaagtccttgaagaggccgagcag
ataccccttgaagtttcggaggaggaagtaaagggcagggtagacctgcgacagcagctc
tgcttcaccatagacggcgaaaacgcaagggactttgacgacgcagtcgccatagagaag
ctgcccaacggcaactacaggctctttgttcacatagccgacgtttcccactacgttaag
ccgggcagtgccctcgacagggaggcctacaggaggggaaccagcgtttacttccccgac
aggtgcatcccgatgctccccgagaggctctcaaacggcatctgctccctgaaccccaac
gtagacaggctcaccttcacctgcgagatggagattaacaagaagggaatggttgtagac
tacaaaatctacgagagcataatccacagtaaggcccggctcacctacacgatagcccag
agaatcctcgacggcgacagggaggccattgagcagtttccccacgttgtagagtccctg
aagacgatgctggagcttgccaaaatcctcaacaaaaagcgctacaagaggggctccttg
gacttcgacctacccgagccggtggttgtgctcaacgcagaaggggagccagttgatatc
tacaaggccgagaggctgtggagccaccggattatagaggagttcatgatagccgcaaat
gaaacggttgcagagtatatgttctggaccgactacccgagcatctacagggttcacgaa
tcccccgacagggagaagctccaggagttcctgaactttgtaaggtctttgggaatcagg
gtgccggccgttaagaacgatatacagccgaagctcctgcagaagatactggagcaggtg
gagggtaaaccggaggagaagttggtcaactacctgatgctccggactatggcccgtgca
aagtactcccccgacaacataggccacttcggccttgcctctacctactacacccacttt
acctcccccatcaggagatacgcagacctgcagctccacaggctcgtaaagatggccctg
aaggggatgtttaagcccgagagcattcccgcctgggaggagaagctggaggttatctgt
aaacacgttacagagcgctcaatccttgcagacgaggcggaaagggacgttgtagagctg
aagaagctccagtttgcagcaaaccacataggggaggtattcgaggccattgttaccggc
gtaaccgagcaggggctctttgtggagaccatagagcaggtaatccccggctttgtgcac
gttacaaaccttaaaaacgactactacatctgcgttcccaagcagtactgtctggtaggt
gaaaagagcggaacggtattcagaatcggcgacagggtgctcgtgaagctcctggccgta
gatatagagaacaggaaggccgagtttgaggtggtaaagaagttaaagtga
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