Temnothorax americanus: 143897876
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Entry
143897876 CDS
T11456
Symbol
Sima
Name
(RefSeq) HIF-1 transcription factor component sima isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tame Temnothorax americanus
Pathway
tame04137
Mitophagy - animal
tame04140
Autophagy - animal
tame04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tame00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
143897876 (Sima)
04137 Mitophagy - animal
143897876 (Sima)
04148 Efferocytosis
143897876 (Sima)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tame03000
]
143897876 (Sima)
Transcription factors [BR:
tame03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
143897876 (Sima)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS
PAS_3
PAS_11
PAS_9
PAS_4
HLH
OS-D
PAS_2
Motif
Other DBs
NCBI-GeneID:
143897876
NCBI-ProteinID:
XP_077262949
LinkDB
All DBs
Position
Unknown
AA seq
1510 aa
AA seq
DB search
MNARLHEMEEERRGGKAREEDENIILGDGRQQRGRCSDLRDWIGKASDYVGVDARHMARG
NGIDFPSCELLKPPPSSYGPAIAFSNVNVLPGNIAAPSSSLTSHAGDNTRSRACDIGTTS
CSTIPYASGLSCNVACSNAPATSCNIASATCNVASAGADCDDPVETRWFRNDGHLADPQS
GTRAANTAASRTCQLGPIDVEDLAMYFDPPTDGCKPPSAGNRAIYSRRSRYAQAARMDQP
REYRRDLDFRDLPSCDLAPNHLRTCDMGPSTLGYCDLGYSDLRLRESLFCAPRLSDSQFC
DVNPHAAHPCEEQPREPGRYDLEQGDPGPGNWFCNNCPELFNFCSEDRWLQCPASDRCPL
YDTSYAYGAPILPPCMYDNGYDDNDNLHHGYVEDEQLLENYLSNEKRKERSRDAARCRRS
RETDIFTELAAALPVAPEQAALLDKASVMRLAIAFLKVRAIVDSIPVSLAKSESSAKTDK
LFPKALNGFMLVLSSDGNMVYLSENVRDYLGVSQMDMMGQSVYEYSHPCDHDELRECLSS
KSTDTDEKRGRNFFLRLKCTLTNKGRKVNLKSASYKVIHCTGRLTNIRDSNSNSMEVDSE
ERQKEDEDTVQDTGISLVLVGSPIPHPSNIEIPLGRYTFLSKHSLSMKFTYADEKLAEYF
GWNSEELMGQSVFDFYHILDNLRLNKCFKCLFSKGQCETEAYRFLSKQGGYAWVVTQATL
IHCSKQQKPISVVCVNYILSGIEHEDEVYSARQLAVHDSGADLVKIEKPLSVLVPTGGGA
VSTTDSSQVSLNDEEETLAEESAVDDESRSDDRPFAVTASIFRSANGKTGCKDTSQKDGA
LPKHAQEQKAFVQALKESLEESIKESLKENDEPAATNCRQSLTKKTSFIFQDKPTVVRDS
SDSAGHRDRPQSVTRHLFAPLVQQQEQQQQQQEQPQLSCRPQTATASIFAPRTEDMNKGF
LYFSEDHPGVTMLKDEPDDLTHLAPTAGDVCVPLEDTPFLSDMLDEIFSNDHYSCPLLSP
GDPLTPELRSADLSGSLKDVDLVDATSRTKDAVDRLADSDPFMYGDSPGSPCGIDPSAVL
PSLSKYRQSPERSMDSLGSPTGGSGGDGLSEDEMLMLGISDSIGDEELALRAPYIPMSDQ
DEALELLMNDDMVMWGSSQSADKGSSKWLLDDREQRNSESSLAQLLRTDQAVSRRYNDHG
GGLLNPTQLLGQTPRKNTIFESDRWSFNQERPNKRIHSGFNMDSESEYKRFKCDDSSFER
INLEDTLLTKQQRLSTTLHKKSLPSLGNTCGSQLLRRLVSSQIPSIASQATTLPDIDGDI
RGDAERRRGDILKQRARVLDDLIDLVETEGDRGGGGGGGENRSSIGDGLDKIDTTSRRRN
PSCGTGGSSVLMNLLVSGCDDPLINSRNVPTLLPRNLTTPLSVNVDNQMVPHCGNADVIS
LPDHLSPDTRKHLIGPFTGGGIDGSTTPIVSPTTSAMVSFDGFDYDASAGLLEVGPDVLG
NLLLGDRNLV
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcgtctgcacgagatggaagaagaaagacgaggaggtaaggcgagagaagag
gatgaaaacatcattctcggtgatggtcgtcaacagcggggtcgttgctccgatctccgc
gactggatcggcaaggcgtcggattacgtcggtgtcgatgcgcgtcacatggcaagagga
aacggaatcgattttccgtcgtgcgaattgctgaaaccaccgccgtcgtcttatggtcca
gcgatcgcgtttagcaacgtcaatgtcttacccggcaatattgccgcaccctcttccagc
cttacgtcacacgctggcgataatactagatcacgagcttgcgatatcgggacgacatct
tgctccacgattccgtatgcgtctgggctgagttgcaacgtggcgtgtagtaatgcacca
gcgacgtcgtgcaatatcgcgtcagcaacgtgcaatgtcgcttcagcgggcgccgattgc
gacgatccggtggaaacaaggtggttccgtaacgacggtcacttggccgacccgcagtcg
gggactcgcgcggcgaatacggcggcttcaaggacttgccagctgggtccgattgacgtt
gaggacctcgcgatgtactttgatccaccgacggacggctgcaaaccgccttcggcgggt
aatcgcgcgatctactcgaggagatcgcgatacgcgcaggccgcaaggatggaccagccc
cgagagtatcgtcgcgatctggatttccgtgatctaccctcttgcgatttagcgcctaac
catttacgaacttgcgacatgggtcccagcactctgggatattgcgatttagggtatagc
gatttacgactacgtgaatcgctattttgcgctccaagacttagcgactcgcaattttgc
gacgtgaaccctcatgccgcacacccgtgcgaggagcagccgcgcgaaccgggccgatac
gatctggaacagggcgatccaggaccaggcaattggttttgcaacaactgcccggaactg
ttcaatttctgcagcgaggaccggtggctacagtgcccggcgagcgatcgctgtcccctt
tacgacacctcgtacgcttatggcgcacccatcttgccgccatgtatgtacgataatggt
tacgatgataatgataacttgcatcacggctacgtggaggacgaacagctcctcgagaat
tacttgagcaatgagaagaggaaggagaggtcccgcgatgcagcgcgctgcagacgcagt
agggagaccgatatcttcaccgaactcgcggccgcgcttccggtcgcgccggaacaggca
gcgcttttagataaggccagcgtaatgagactggcaattgcttttctcaaagtccgggcc
attgtggattccattccagtttcgctggccaaatccgagtcgtccgcaaagacagataaa
ctatttccaaaagctctcaatggctttatgttagtactctccagtgacggcaatatggtc
tacctgtcagagaacgtaagagattatctcggagtgtcacaaatggacatgatgggacaa
agtgtatacgaatacagtcatccctgtgaccatgatgaattgcgcgagtgcctgtcttcg
aagtcgacggataccgatgagaaacgtggccgcaactttttcttgcggctcaaatgcacc
ctcaccaacaaaggcaggaaggttaatctgaagagtgcttcttacaaggtgattcattgc
actggcagactgacaaacattcgcgactcaaactcgaattccatggaagttgatagtgaa
gaacgacaaaaagaggatgaggacacagtacaagacacgggtatttctctggtgctcgtg
ggtagccctataccccatcccagtaatatcgagatacctttaggacgctatacctttttg
tcgaagcacagtctcagtatgaagttcacctatgccgacgagaaattggccgaatacttt
ggctggaacagcgaggaactgatgggtcaatcagtcttcgatttttatcacatactcgac
aatctgcggctaaataagtgtttcaaatgcctgttcagcaagggccagtgcgagaccgag
gcgtacagatttctcagcaagcaaggcggctatgcctgggttgttactcaggccactctg
atccactgctctaaacagcagaagccgatctccgtcgtctgcgtcaattacatcctaagt
gggatcgagcacgaggatgaagtgtacagcgcgcgccaactggccgtgcatgacagcggt
gccgatttggtgaagatagagaaaccattgtcggttttggtgccgaccggtggtggtgcc
gtgtcgacgacggactcgagccaggtatcgctgaacgacgaggaggagactctcgcggag
gaatcggccgtcgacgacgaatccaggagcgacgatcgtccgttcgccgtcaccgcgtcg
atctttcgctcggccaacggaaaaaccggctgcaaagacacttcgcaaaaggacggcgcc
ttgccgaaacacgcccaggaacagaaggcgttcgtgcaagctcttaaggagtccctggag
gagtcgattaaggaatcgctcaaggagaacgacgagccagcagcgacgaactgccgacag
tccctcactaagaagacgtccttcatcttccaggataaaccgacggtggtgcgtgattct
tcggacagtgctggacaccgtgatcgtccgcagtcggtcacgaggcatctgtttgcaccg
ctcgtgcagcaacaggaacagcaacagcaacaacaggaacagccgcaattatcctgccga
ccgcaaacggccacagcgagcattttcgcgcctcgcaccgaggacatgaacaagggcttc
ttgtatttcagcgaggatcatccgggtgtcaccatgttgaaagacgagccggatgacctg
acacatctcgcacccacggctggcgacgtgtgcgtacccttggaagatactcccttcctg
tcagatatgctggacgagattttcagtaacgatcactacagctgtcctctgctgagtccg
ggcgaccctctgacaccggagctgcgttccgcggatctctcaggatcccttaaggacgta
gatctggtggacgctactagcaggaccaaggacgcggttgatcgtctggccgatagcgat
cccttcatgtacggcgactcgcccggaagtccctgcggcatcgacccgagcgccgtgttg
ccgtccctctcgaagtatcggcagagtcctgagcgcagcatggactcattaggtagtcct
acaggaggtagtggcggcgatgggctttccgaggacgagatgcttatgttaggtatcagc
gacagcataggcgatgaagagttggcactcagagccccctatattccaatgtcagatcag
gacgaagcgttagagctgctcatgaacgatgacatggtcatgtggggctcgtcacaatct
gccgataaaggatcttcgaaatggctactcgacgatcgagagcaacgtaattctgaatcc
agtctggcacaattgctacgaaccgaccaagcggtatcgcggcgatacaacgatcacggc
ggaggtttgctaaatccgacgcagttattggggcaaacacccagaaaaaacacaatcttc
gagtccgatcgatggtcctttaatcaggaacgcccgaataaacgcattcactccggattt
aatatggactccgaaagcgagtacaagcgttttaagtgcgacgactcgtctttcgagcgt
ataaatctcgaagatactttattaacgaagcaacagcggctgtcgacaacgcttcacaag
aagtcactaccgagtctcggtaatacctgtggtagtcagcttttgcgtcgcctcgtctcg
tcgcaaataccgagcatcgcatcgcaagcgacaactttacccgacattgatggcgatatt
cgcggtgacgccgaacgtcgccgcggggacattttgaagcagcgcgctcgcgtcctcgac
gatctcatcgacctcgttgagacagagggtgatcgcggcggaggaggaggcggaggcgaa
aatcgcagcagcatcggcgatggcctagacaagatcgacacaacaagccggaggaggaat
ccttcctgcggcactggtggcagcagtgtgctaatgaatctcctggtttccggctgcgac
gatcctctgatcaattcccgcaacgtaccaactttgttaccaaggaacctgacgaccccg
ttgtccgtcaacgtggacaatcagatggtaccgcattgcgggaacgcggacgtcatatcc
ttgcccgaccacctcagtccggacaccaggaaacacttgatcgggcccttcaccggcggc
ggcatagacgggagtacaactcccatagtctctcccacgacgtccgcgatggtgtctttc
gatggcttcgactacgacgcatccgcgggcctgctcgaagtgggaccagatgtactcggg
aatctactgctcggggatcgaaatctggtgtga
DBGET
integrated database retrieval system
