Temnothorax americanus: 143900018
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Entry
143900018 CDS
T11456
Symbol
Fand
Name
(RefSeq) pre-mRNA-splicing factor SYF1 fand isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tame Temnothorax americanus
Pathway
tame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143900018 (Fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tame03019
]
143900018 (Fand)
03041 Spliceosome [BR:
tame03041
]
143900018 (Fand)
Messenger RNA biogenesis [BR:
tame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
143900018 (Fand)
Spliceosome [BR:
tame03041
]
Complex B
Other components
Prp19-related factors
143900018 (Fand)
Complex C
143900018 (Fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_15
RPN7
TPR_12
Mad3_BUB1_I
TPR_10
PPR
DHR-2_Lobe_A
ARM_TT21_C
Spore_III_AF
Motif
Other DBs
NCBI-GeneID:
143900018
NCBI-ProteinID:
XP_077267044
LinkDB
All DBs
Position
Unknown
AA seq
842 aa
AA seq
DB search
MLEREDDEGNLYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTNSKNLNVVYERALRE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE
CYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIERLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRI
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRYGNCKEALKLMHRATTMPARKVAYHDEAETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYALFLEENNYFEEAFRAYEKG
IALFKWPNVFDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNQVSDVPMDAMRLLDSKITSSTDNAADIKGGIKF
VRGVTEKDGKSESHVNNPDEIDIDIDDENDNDAEIEEDVPIEKQTIPSQVFGNLKAVQGE
ED
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtgaggatgatgaaggaaatttatatgcctttaacgaggaggatttacca
tacgaagaagaaattttacgaaatccatattcagtgaaacattggcaacgttatatcgat
cacctaaaaaatacaaacagtaagaatttaaatgtggtatatgaacgagcattgagagaa
cttccgggcagttacaagctgtggtataattatcttcgacaacgtgtgagtcaattaaaa
ggtcgatgtataacagatccattgtacgaagatgttaataatgcgtttgaacgtgcttta
gtatttatgcataaaatgccacgcatatggatggattattgcacgctaatgactgaagaa
tgttatataacacgaacgcgtcaagtgtttgatcgatctcttagagcacttcctatcaca
cagcatcatcgtatatggccattatatattcattttttaaagaaacacaatgtttacgaa
actgctgttagagtctttaggagatatttaaagctagcaccggaagatacggaagaatat
atcgaatatttgatatcgattgaaagactcgatgaagctgctgtaaaacttgcgcagatt
gtcaaccaggatgattttgtatcgaagcatgggaaatctaatcatcaactatggaatgaa
ttatgcgatttaatatcaaaaaatccttccaagataaagtctttgaatgtagatgctatt
attagaggcggtttaagacgttatacagatcagttgggacctctatggaattcattggca
gattattatgtccgaagtggtctcttcgaaagggcgagggatatctacgaagaagctata
cagactgttaccaccgtcagagattttacacaagttttcgatgcttatgcacaatttgag
gaacttagtcttaagaagctcatagaagaagcagcgagaaatcctactgaagaagatgac
attaagttagagttgagactggcacgattggaacatctcatggaaaggagactattgttg
ctcaattctgtattattacgacaaaatccacacaatgtagcggaatggcataaaagaata
aaactttatgaagggcaaccacatgagataattaatacatacacggaagcggtgcagaca
gtgcaaccacaattggcagttggtaaattgcacacattgtgggttgcatttggcaaattt
tatgaggaaaatggacaaatagaggatgctagagtagtatttgaaaaggcaactcatgtt
ccatacaccaaggtagacgatcttgcctcagtatggtgtgagtgggcagaaatggaaatt
agatacgggaactgcaaagaagctttaaaactcatgcatcgtgccactacaatgccagct
agaaaagtggcataccatgacgaagcggaaacagtacaaatgagattatacaaatcttta
aaagtatggtctatgtatgcagacttggaagagagtttcggaacatttaagacctgtaaa
gcagtgtacgacaaaataatcgacttgaaaatcgcaactcctcaaattattatcaattat
gcactgtttttggaagaaaataattactttgaggaagcatttagggcatatgaaaaaggt
attgcgttgtttaaatggcctaatgtttttgacatttggaacacatatctcacaaaattt
ttaaaacgttacggtggaacgaaactagaacgtaccagagatttgtttgagcaatgctta
gaacattgtccaccaaagtatgccaaagccttatatttgttgtacgcaaagctagaagaa
gaacatggcttagcgagacatgccatgtcagtgtatgaacgtgcgacaaatgctgtcctc
ccagaagaaagatttgacatgttcaatatatacataaagaaagctgccgacatatatggt
gtgccaaaaactcggcaaatatatgaaaaggctatagaagtattgaatgatgagaacaca
agagaaatgtgtttacgattcgctgaaatggagaccaaattaggagaagtagatagagca
agagcgatatatgcgcattgtagccaaatatgtgacccgagagttacttccaatttttgg
caaatttggaaagaatttgaagtcaggcatggaaatgaggatacaatgcgtgaaatgctt
cgaatcaagcgtagcgtacaagctatgtataacactcaagtaaacatgatgtcggcacaa
atgttgaataacgcatccaatcaagtatcggatgttccaatggatgctatgcgtttatta
gacagtaaaattacatcaagtacagacaacgccgctgatattaaaggaggcatcaaattt
gtacgtggcgtaacagaaaaggatggtaaatcagaatctcatgtgaataatccagatgag
attgatatcgacatagatgatgaaaatgataacgatgcagaaatagaggaagacgtgccg
atcgagaaacagactataccatcacaggtatttggaaatttaaaggcagtccaaggtgaa
gaagattga
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