Temnothorax americanus: 143900026
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Entry
143900026 CDS
T11456
Symbol
Caper
Name
(RefSeq) RNA-binding protein 39-like protein Caper isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
tame Temnothorax americanus
Brite
KEGG Orthology (KO) [BR:
tame00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tame03041
]
143900026 (Caper)
Spliceosome [BR:
tame03041
]
Common components
Common spliceosomal components
General mRNP proteins
143900026 (Caper)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
Nup35_RRM_2
RRM_7
RRM_10
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
143900026
NCBI-ProteinID:
XP_077267065
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MREKGTRRSPLSPSLSSVSLAIYIFVLSLSLCVVWYMDSFIYTSIYIYIYKIHIYVEQST
PLSLMYRLLINTSVFCTYRWYVTCTLALIGCAPASSLHLKDDEEQDSSSKDKSSKENGSS
RKSSGKSKHRSRSRSRSRDRDRRDKDRRDRDRDRDRDRDRGDRDRDRGDRDRRRRSRSRD
RRDRDRDRDGERDRDRRDRDRDRDRRRKRSLTPLTLPRARPPFGKGHSPLGINDELTPEE
RDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTL
ALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVGSLHFNITEDMLRG
IFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVTE
RTDLIQGPSLLDTDELDRSGIDLGATGRLQLMFKLAEGTGLEIPPAAANALNMAPVMAQP
QPPPQAAPPIATQCFMLSNMFDPQNETNPNWAKEIRDDVIEECNKHGGVLHVYVDQASPQ
GNVYVKCPSIATAVAAVNSLHGRWFAGRVITAAYVPVVNYHSLFPDAMTALQLLVPSAPR
RGM
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaaagggaacccgccgctctcctctatccccctctctctcctctgtcagtctc
gctatatatatttttgtactctctctttctctgtgtgtggtatggtatatggatagtttt
atatatacaagtatatatatatatatatataaaatacatatatatgtagaacaaagtaca
cccttgtctctgatgtaccgactattgatcaacacctccgttttctgtacttatagatgg
tacgtaacatgtaccctcgcgctcataggatgtgcgccagcgagttccttgcacttgaaa
gacgacgaggagcaggactcctcttccaaagacaagtcctccaaggagaatgggtctagt
cgcaaatcgtctgggaaaagcaaacatcgctcgcgttctcgttcacgatcccgagatcgc
gatcgccgagacaaagatcgacgggatcgcgacagagacagggaccgagaccgcgatcgc
ggcgacagggatcgcgatcgcggcgatcgcgatcgtcgacgaagatcaagatcgcgcgac
agacgggatcgggacagggatcgggacggcgaacgagatagggacagacgagacagagat
cgggacagagacagaagaaggaagagatcgctgacaccattgacccttcccagagcccga
ccgccgttcggcaaaggtcacagtccgcttggaataaacgatgaattaacaccagaggaa
cgagatgctcggactgtcttttgtatgcagttaagtcagcgaattcgtgcgcgcgatttg
gaagaattcttttcaagcgtcggcaaagtacaggatgtcagacttatcacatgcaacaaa
actcgaagattcaaagggattgcttatgtagagtttaaagacccagagagtgtgacactt
gctcttggtctatcgggtcaaaagcttcttggagtgcctatcgtagtacagcatacacag
gctgaaaagaatcgcatgggtaattcgatgccgaatctaatgcctaagggacaaacagga
cccatgcgattatacgtaggatctctacactttaacattacagaagatatgcttcgcggg
atctttgaaccctttggaaagattgacaacatacagttgattatggatcctgaaacgggg
cgcagcaagggttacggtttcctgacttttagaaatgcagacgacgcaaaaaaagcgttg
gaacaactgaatggattcgagctcgctggtagacctatgaaagttggaaacgtaacggaa
cgaaccgacctgattcaaggaccttctctactcgatactgatgagctagatcgtagtgga
attgatctcggagcgactggaaggttacaattgatgttcaaattggcggaaggtactggc
ctggaaattcctcccgctgcagcaaacgctttaaatatggcaccagtaatggcgcagccg
caaccaccacctcaagctgcacctcccattgcgacacagtgtttcatgttatcgaacatg
tttgatccgcaaaatgagacgaatcctaactgggcaaaagagatccgcgatgacgtgatc
gaggaatgtaacaagcacgggggcgttctgcacgtatatgtggatcaagcatcaccgcag
ggcaacgtttacgtgaaatgcccgtcgatcgcgactgccgtggcggcggtgaactcgttg
catggtcgatggttcgctggccgtgtcataaccgcagcctacgtaccggtggtgaattat
cactcgttattccccgatgcgatgactgcgttgcaactgttggtgccaagtgcgccgcga
agaggaatgtga
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