Temnothorax americanus: 143900424
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Entry
143900424 CDS
T11456
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase Mtr4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tame Temnothorax americanus
Pathway
tame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143900424 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tame03019
]
143900424 (Mtr4)
03041 Spliceosome [BR:
tame03041
]
143900424 (Mtr4)
03009 Ribosome biogenesis [BR:
tame03009
]
143900424 (Mtr4)
03016 Transfer RNA biogenesis [BR:
tame03016
]
143900424 (Mtr4)
Enzymes [BR:
tame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143900424 (Mtr4)
Messenger RNA biogenesis [BR:
tame03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
143900424 (Mtr4)
Spliceosome [BR:
tame03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143900424 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
143900424 (Mtr4)
Ribosome biogenesis [BR:
tame03009
]
Eukaryotic type
Pre-60S particles
Helicases
143900424 (Mtr4)
Transfer RNA biogenesis [BR:
tame03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
143900424 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
143900424
NCBI-ProteinID:
XP_077267886
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MANFTEDLFDVFDEHDTEGDDTEIPHIVKKIEPETGVKRQLDTDDDKSAAKKLRHESVLD
DINLEEVACRIKVHTVETVESCMHEIAIPPNQEYVPLEHQQDKPAKEYKFILDPFQKEAI
LCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFHEEFKD
VGLVTGDVTINPTASILIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEE
TLILLPDNVHYVFLSATIPNARQFAEWVTHLHNQPCHVVSTDYRPTPLQHYIFPVGGDGI
HLVVDETGQFKEENFNRAMACLQNMGDAAKGDMKGRKGGLRATNSGQTNIFKMVKMIMER
NFAPVIIFSFSKKDCEVYAMQMAKLDLNTLEEKKLVDEVFNNAVDVLNDDDKKLPQVTNL
LPLLRRGIGIHHGGLLPILKETVEILFGEGLIKTLFATETFAMGLNMPARTVLFTAPRKF
DGKDFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVVGKAIVQGKPDPINSAFH
LTYNMVLNLLRVEEINPEYMLERSFFQFQNQAGIPALYNKVKELSTAYNTVNVDRYDEIA
SYHDVRQQLNRLSKEFQSFLTRPEYLVPFLTSGRLVKVKNENTFDWGMVVNFKKKNPKNP
VKDKTVIVIDVLLHLSKESKEGNPIPCRDGEEGEMEVVPVLHNLISQISSIRLRYQKDLR
PPDNRKSVLKSIREVKKRYSEDIPLLNPITDMHIQDQAFKDIVKKIEVLEKRLYAHPLHK
DPNVNVLYEQFLHKEELATQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTSADVIE
LKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDEKSNEMPKSTEELSGP
LRQMQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYAWCKGATFLQICKMTDIFEG
SIIRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattttaccgaagacttgtttgacgtttttgatgagcacgatacagagggtgac
gatacggagatcccgcatattgtaaagaaaatcgagccagagacaggagtaaagcgacaa
cttgatacagacgacgataagtcagctgccaaaaaattgcgacacgaatctgtcttggat
gacatcaacctagaggaggtggcatgtcgtataaaagtgcatactgtagaaactgtagaa
tcttgtatgcacgagattgctatccctcctaatcaagagtatgtacctttggagcatcag
caagacaagccagccaaagaatataaatttatacttgatccatttcaaaaggaggcaatt
ttatgcattgagaacaatcagtcggttcttgtctccgcacatacgtcagctggtaaaact
gtcgtggctgaatatgcgatagcgtgttctctcagggataagcagagagtaatatacacc
actccgatcaaagcgttgagcaatcagaaatatagagaatttcacgaggaatttaaggat
gttggtttggtaacgggcgatgttactataaatccgacagcgagtatactaatcatgact
actgaaattttacgaaatatgctctacagaggttcagaggtaatgcgtgaagttggttgg
gtaattttcgatgagattcattacatgcgcgataaagagagaggcgtggtgtgggaggaa
acgcttatcctattgccggacaatgtacattatgtatttctgtccgctactataccaaac
gcacgacaattcgcggagtgggtgacgcatttgcacaatcaaccctgccatgtagtgtct
acggactacagacctactccgttgcaacattatatctttccagttggcggtgatggtata
catctggttgtagacgagaccggccaattcaaggaggaaaatttcaatagagccatggcg
tgcctacaaaatatgggtgacgcggctaaaggtgacatgaaaggacgcaaaggtggtcta
cgtgccacgaacagcgggcaaacgaatatcttcaagatggtaaaaatgatcatggagaga
aacttcgcgcccgtaataatcttcagtttttcgaagaaggattgcgaggtttacgcgatg
caaatggccaaactggatttgaacacgttagaggagaaaaaactggtagacgaggttttc
aacaatgcggtagacgttctcaatgacgacgacaaaaagttaccgcaagttacgaacttg
ctgccgcttttgcggcgtggaataggaatccatcacggtggactcttgccgatcttgaag
gagacggtcgagatattattcggcgagggtctgatcaaaacgcttttcgccactgaaacg
ttcgcgatgggtctgaacatgccggcacggacagtcctgtttacggcaccccgtaaattc
gatggcaaggactttcgttggatcacgtcgggtgaatacattcagatgtccggtcgcgcc
ggcagaagaggtctcgacgacaaaggaattgtcatattgatgatagacgagcaagttagt
cccgtcgttggtaaagctatcgttcaaggaaaaccagatccaatcaactccgcgtttcac
ttgacctataatatggttcttaatcttctccgagtggaagagattaatccagaatacatg
ttggaaagaagcttctttcagtttcaaaatcaagctggtattccagctttgtataacaag
gtaaaagaattatctaccgcttacaataccgtaaatgtggacagatatgacgagattgct
tcttatcacgatgtacgccaacaactcaatcggctcagcaaagagtttcaatcatttcta
acacgaccggagtacttggttccgtttttaacgtctggaagattagtaaaagtgaaaaat
gaaaacacgttcgattggggcatggtagtgaattttaaaaagaaaaatccgaaaaatcca
gtaaaggacaagactgttattgtcattgacgttttacttcacttatcgaaagaatctaaa
gaaggcaatccaattccatgtcgcgatggtgaagaaggcgaaatggaagtagttcctgtt
ttgcataatttaatttcgcaaatcagttcaattagattgcgttatcaaaaggatcttagg
ccgcctgataataggaagagcgtactgaaatcgatacgagaagtgaaaaagagatactcg
gaagatataccattactcaaccctattacagacatgcatatacaggatcaggcttttaaa
gatattgtcaaaaaaattgaagtgttagagaaaagattatatgcacatcctttgcacaag
gatcccaatgtaaacgtattatacgaacaatttttgcacaaggaagaattggctacgcaa
cttaagcaagccaaggaagagtttaagcaggctaagtcgatacttcaaatggacgaactg
aaatgtagaaagcgagttttaaggagaatggcgtattgcacatcggcggacgttatagaa
ttgaaaggacgtgtagcttgcgagctgaacggtgccgatgagcttttaatgactgagatg
atttttaatggtctttttaattctttgagcgtgccacaaatggtagcgttaatcagttgt
tttgtatgtgacgaaaagtcaaacgaaatgcctaaaagtacagaggaattaagtggtccg
cttaggcagatgcaggacttggctcgacgaatagcgaaggtatcgacagaggccaatctg
gaattagacgaggatgcatatgtcgatagattcaaaccgtatttaatggacgttatatac
gcttggtgtaaaggcgcaacatttttacaaatttgcaaaatgacagatatatttgaagga
tctattatcaggtgtatgcgacgtttagaggaggtacttcgacaattatgtcaagctgca
aaaggtatcggaaatacagatctagaaaataaatttagcgaggcgatcaaacttataaaa
cgggatatcgtatttgctgcgtccttatatttataa
DBGET
integrated database retrieval system
