Temnothorax americanus: 143902195
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Entry
143902195 CDS
T11456
Symbol
Tst
Name
(RefSeq) superkiller complex helicase subunit twister
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tame Temnothorax americanus
Pathway
tame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143902195 (Tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tame03019
]
143902195 (Tst)
Enzymes [BR:
tame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143902195 (Tst)
Messenger RNA biogenesis [BR:
tame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
143902195 (Tst)
mRNA degradation factors
3'-5' decay
Ski complex
143902195 (Tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
nSTAND3
PhoH
Motif
Other DBs
NCBI-GeneID:
143902195
NCBI-ProteinID:
XP_077271015
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MTESTRFTEPPPIWPDIKSELREYIECPERLPIHQLDSTQRYWPRRADVLSLLEFDLAPV
STTLRFDRDPVTGKIGEIQEICLQGAGETARNSMSMTRAPGSLADGVRGNPSNIPFWPGG
FEEPEVPENEIVINDTDFEKNLRTLAKGFSSGLEFESDNCTPINCTRNETEISLSEETEK
LIINNDNINLMSVVHEEGNLLGSSSSVEEPRKENVQISDSNIPFKENSTLSKDISIPVLK
ISEKQTELSKTEWAEQLDVSAPVTDFDKRIPDPAITFNYELDTFQKQAILKLEENSNVFV
AAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLLTGDLQIN
QTASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQNINI
VMLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVLDSN
GQFLLDGWYKATNTSDKKKDKTPKDCRRRIQMTPKQEEVLWRAFVSHLQSNDMLPVVVFT
LSRKRCDMNAATLRNLDLTTAREKHQVHVFFQSNIKHLKGSDRELPQVLMMQELLGKGVG
IHHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKYDGSNFRTLY
PTEYIQMAGRAGRRGHDSTGTVIVMCRNDVPHFNDLKPMMCGEPQTLESKFKVTYSMLLN
LRRVNESVTVEAMMRKSFKESPLASQEATYNNELRKIERELSNLPPLTDMQKILSAFYHK
AVDYLEDVKFLNPYLFDSKKTAKSLTEGRVLLISYVNHYNKLALLLKVHYHKSSIQYKVL
ILKDANAPTSGDVEFKSPQIFEKWCEIMSLTKKEIFVPSTNPSHEVLTIFPWHILKITNC
QIKVDCSLVLNDWEKRQISRFKNDPPGQTCQTAVQELTSLSYNASIKPQILQPYIKPSSK
NDFQLRIQHRDKLKANLGDMKCKEIPNFEEQFRPVFERNQLEDKMRQLQLKLSDEGMALY
PDYLNMVALLKHFKYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQPAEIAALL
SALIFQQRTEFEPKLPPNLANACKIMSEVHAELEHLEQYYQLSTLQPLNFGLVEVVYEWA
QAKSFAEIMKMTDVQEGIIVRCIQQLGETLQDVKNAAVTIGDPVLKEKMEEASTAIKRDI
VFAASLYTQD
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatcgacgcgatttaccgagcctccacccatctggcctgatattaaatcagaa
ctgcgggaatacattgaatgccctgaacgattacctatacatcagctcgacagtacccaa
cgttattggccacgcagagcagatgttctttcgttgttggaatttgatttggctccggtc
agtaccacgctgagatttgaccgtgatccagtaacgggcaaaattggcgagatacaagaa
atctgcttacaaggtgcaggggaaacggcaaggaattctatgtctatgactcgtgcacct
ggatcactggcagacggagttcgaggtaatcccagtaatattccattttggcctggtggt
tttgaagagcctgaagtacctgaaaatgaaatcgttattaacgatactgacttcgagaag
aatttaaggacattagccaaaggatttagctcgggtttagaatttgaaagtgacaattgc
acaccaatcaattgcacgaggaacgaaacagaaatttcattgtctgaagaaactgaaaaa
ttaataatcaataatgataatataaatttaatgtctgttgtacacgaggagggaaatttg
cttggctcatcgtcttcagttgaggagccgagaaaagagaacgttcaaatttcggacagc
aacattccctttaaagaaaattccactttatccaaagatataagtatacctgtcttgaaa
atatccgagaaacaaacagaactttcaaagacagaatgggcggagcagcttgatgtatcc
gcaccagtaactgactttgacaagagaatacctgacccagcaatcacattcaattatgaa
ctggacacctttcagaaacaagctattcttaaattggaagagaatagcaacgtcttcgtt
gctgcgcatacatcagcgggaaagactactgttgctgaatatgccattgcattgagccaa
aagcatatgacgagagtgatttatacgtctcccataaaagcactatcaaatcaaaaatat
cgtgattttaagagaaagtttgaaagcgttgggttactaacaggtgatttgcaaataaat
caaactgcttcatgtctaattatgacaacggagatcctacaatcaatgttgtattgtgca
tccgatgttctacgggatctagaatttgttatatttgacgaagtgcattatataaataat
gaagatagaggtcacgtatgggaagaaatagtcattcttttaccacagaatattaatata
gtaatgttatctgcgactgtaccaaatccaataatatttgcggattgggtcggtcgtatc
aaaaagcgaaagatgtacgtgattagcactttgaaaagacccatacctcttttacattac
ttgtacactggcactgacggtaagactaaggatgacaaattcttggtccttgatagcaac
ggccagtttttattggatggatggtacaaagcgacaaatacatccgataaaaagaaagac
aaaaccccaaaggactgtagaagaagaattcaaatgacgccgaaacaagaagaggtatta
tggagagcatttgtaagccatcttcagagcaatgatatgttacccgttgtcgtatttact
ctgtcgaggaaacgctgtgatatgaatgctgctacgttaagaaatcttgatttaacgact
gcgagggaaaagcatcaagtacatgtatttttccaatctaacataaaacacctgaagggt
agcgacagagaattaccacaagtacttatgatgcaagagctcttaggaaaaggagtgggt
atacatcatagtgggatactgccaattttgagagagatcgtagaaatgttatttcagagt
ggagttgtgaagttactattcgcgacagaaacttttgctatgggagtcaacatgccagca
cgcacggtggtgttcgattctatacgaaagtacgacggaagcaactttcgtaccctgtat
ccgactgaatacatacaaatggctggtcgtgccggacggcgaggtcatgacagcacggga
actgttatagtgatgtgcagaaacgacgtgccacactttaacgacttgaaacctatgatg
tgcggtgagccgcaaacattagaatcgaaatttaaagtcacgtattccatgcttctaaat
ttgagaagggtaaacgaatccgtcaccgttgaggcgatgatgcgcaaatctttcaaggaa
tcgccattagcctcgcaggaagcgacatataacaacgagttacgaaaaatcgagcgcgaa
ttgtcgaacttgccgcctttgaccgatatgcaaaaaatactctctgcattctatcacaag
gcggttgattatctggaagatgttaaattcttgaacccttatttattcgattcgaaaaaa
acagcgaaaagtttaactgagggtagagtcttgttaatatcctacgtgaatcattacaac
aaactagccctattattgaaagttcactatcacaaaagctctattcaatacaaagtcttg
atacttaaggacgcgaatgcacccacttccggagatgttgaattcaaaagtcctcagata
ttcgagaaatggtgcgagattatgagcctgacaaaaaaagagatatttgtcccaagcact
aatccgtcacacgaggttctgactatatttccttggcacatattgaaaataactaattgt
cagataaaagttgactgttctttggtattaaatgattgggaaaagagacaaatctcacga
ttcaaaaacgatccaccgggacagacatgtcagacagcggttcaagaattgacttctctg
tcatataacgcttctatcaagcctcaaatcctacaaccgtatatcaagccctcgtcgaaa
aatgattttcaattgagaatacaacatagggacaaattaaaagctaatctgggcgatatg
aagtgcaaggaaataccaaactttgaagaacaattcagacctgtattcgaacggaatcaa
cttgaagataaaatgcgtcagcttcaacttaaactcagcgatgaaggaatggcattgtac
ccggattacctgaatatggtagcactccttaaacattttaaatacatagataatgatgaa
agagtcgccctaaaaggaagagtcgcgctgcaaatgggtagtaacgaactgctgataaca
gaattgattctcaaaaatgtgttgactgttttacaaccggcagaaatagcagcgttgtta
tcagcactgatcttccagcaacgcacagaattcgaacctaaactcccaccaaaccttgct
aacgcttgcaagataatgagcgaggtgcacgcggaactggagcatctggagcaatactat
caactatcgacattacaaccgttgaatttcggcttggtggaggttgtctacgaatgggcg
caggctaaatcattcgccgagatcatgaagatgacggatgtccaggaaggaattatagtt
cgttgcatacagcaactcggcgaaacattgcaagatgttaaaaatgcggctgtgacgata
ggcgacccagttttgaaagagaagatggaggaagcctcgaccgcgatcaaacgtgacata
gttttcgccgcgtccttatacacccaagactga
DBGET
integrated database retrieval system
