Trichlorobacter ammonificans: GEAMG1_0041
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Entry
GEAMG1_0041 CDS
T09459
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tamm
Trichlorobacter ammonificans
Pathway
tamm03420
Nucleotide excision repair
tamm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GEAMG1_0041 (pcrA)
03430 Mismatch repair
GEAMG1_0041 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tamm03400
]
GEAMG1_0041 (pcrA)
Enzymes [BR:
tamm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GEAMG1_0041 (pcrA)
DNA repair and recombination proteins [BR:
tamm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEAMG1_0041 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
GEAMG1_0041 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_11
F-box_4
Motif
Other DBs
NCBI-ProteinID:
CAH2029863
LinkDB
All DBs
Position
GEAMG1:75348..77570
Genome browser
AA seq
740 aa
AA seq
DB search
MSDHLLSHLNPPQKQAVLHGEGPLLILAGAGSGKTRVITHRIVHLIRERGVRPRSILAVT
FTNKAAGEMAERVRHLLGSNDIPLISTFHAACGRILRNDGYHLGYDSSFAIYDDKDSERL
LKEIVRELNLDEKRFPPAQLGGRIDDCKNRGLAPEELPLGDLWNRQFVEIYATYQERLKR
CNAMDFGDLLLQAVRLFEQHPAVLAQWQERFQWLLVDEYQDTNPVQYRLIRLLAGERKNL
CVVGDDDQSIYSWRGADIRNILEFEKDFPEVTVIRLEQNYRSTPTILKAAGSVVARNMGR
KAKTLWTDNPDGEPIRHERLENDRDEARFVAREILGLHRGGLPLTEAAVFYRTNAQSRLL
EEALVAEGLAYHIVGGVRFYARMEVRDILAYLRLLENRSDEVALKRIINVPARGIGSATI
DRIADLALREGIDFDTALGRAAEGSLLASGPTAKVAGFVGLLESFRRRLATTPLPELVRA
VVEESGYAERLRQSRDEEDAERLENLDQLLAAVEEFSEGNPEAGLAGFLEQVALVSDLER
GEKGTPSVTLMTLHAAKGLEFRAVFMVGMEERLFPHVRSLDDPDAMEEERRLCYVGMTRA
RERLYLLNARRRHLFGQEQVNLVSRFLREIPGELLTGSGAVQEGWNQSSCRSDSAWRAPE
PVGHNLAAVSSALEEVEMVPEPAEEYGDGVHLGMKVRHPKFGPGTVRKIEGSGDSQKVTV
WFNSCGPKKLMVRFAGLERA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccatcttctctcccatctcaaccccccccagaaacaggccgtgctgcatggc
gaggggccgcttctgatcctggccggggccggctccggcaagacccgggtcatcacccac
cggatcgtccacctgatccgggagcggggggtgcgcccccgcagcatcctggcagtcacc
ttcaccaacaaggcagccggcgaaatggcggaacgggtgcgccatctgctgggcagcaac
gacattccgctgatctcgaccttccacgccgcctgcggccgtatcctgagaaacgacggt
taccacctgggctacgactcctcctttgccatctacgacgacaaggacagcgaacgcttg
ctgaaagagatcgtgcgggagctgaacctggacgagaaacgctttcccccggcacaactg
ggggggcggatcgacgactgcaagaaccggggcctggccccggaggagctgcccctgggg
gacctctggaaccggcagttcgtggagatctatgccacctaccaggagcggctgaagcgg
tgcaacgccatggatttcggcgatctgctgctgcaggcggtgcggctcttcgagcagcat
ccggcggtgctggcccagtggcaggagcggttccagtggctgctggtggacgagtaccag
gataccaacccggtgcagtaccgcctgatccgcctgctggccggggagcgcaagaacctc
tgcgtggtgggggacgacgaccagtccatctactcctggcggggggcggatatccgcaac
atcctggagttcgagaaggattttcccgaggtcaccgtgatccggctggagcagaactac
cgctccacccccaccatcctcaaggcggccggcagcgtggtggcccgcaacatggggcgc
aaggccaagaccctctggaccgacaacccggacggcgagccgatccgccacgagcggctg
gagaacgaccgggacgaggcccgcttcgtggcccgggagatcctgggactccaccggggc
ggcctccccctcaccgaggcggcggtgttctaccgcaccaacgcccagtcccgcctgctg
gaagaggcgctggtggccgaggggcttgcgtaccatattgtcggcggggtccggttctac
gcccggatggaggtgcgggatatcctggcctacctgcggcttctggagaaccgctccgac
gaggtggcgctgaagcggatcatcaacgtgcctgcccgggggatcggtagcgccaccatc
gaccggatcgccgacctggcgctgcgggaggggatcgatttcgacaccgccctgggtcgt
gccgccgaagggtcgcttctggcaagcggccccaccgcgaaggtggccgggtttgttggc
ttgctggagagtttccggcgccgtttggccacaacgccgctgccggagctggtgcgggcg
gtggtggaggagtcgggctatgccgagcggctgcgccagagccgggacgaggaggatgcc
gagcggctggagaacctggatcagttgctggcggcggtggaggagttcagcgaggggaac
ccggaggccggtctggctggttttctggagcaggtggcgctggtgagcgacctggagcgg
ggggaaaaggggacgccgtcggtgaccctgatgaccctgcatgccgccaaagggctggag
ttccgcgccgtgttcatggtggggatggaggagcggctcttcccccatgtccgttccctg
gacgacccggacgccatggaggaggagcggcggctctgctacgtggggatgaccagggcc
cgggagcggctctacctgctgaacgcccggcggcggcacctgttcggccaggaacaggtg
aacctggtctcccgttttctgcgggaaatcccgggggagttgctcaccggcagcggcgct
gtccaggaaggctggaaccagtcgtcctgccgcagcgacagcgcctggcgggcaccggag
ccggtcggtcacaatctggccgccgtttcctcggctttggaagaggtagaaatggtgccg
gagccggcggaggagtacggggacggtgtccatctcggcatgaaggtccgccatcccaag
ttcgggcccggcacggtgcgcaagatcgaagggagcggcgacagccagaaggtgacggtc
tggttcaatagttgcggtcccaaaaagctgatggtccgctttgccggactggagagggcc
tga
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