Trichlorobacter ammonificans: GEAMG1_0690
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Entry
GEAMG1_0690 CDS
T09459
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tamm
Trichlorobacter ammonificans
Pathway
tamm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GEAMG1_0690 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tamm03400
]
GEAMG1_0690 (recD)
Enzymes [BR:
tamm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GEAMG1_0690 (recD)
DNA repair and recombination proteins [BR:
tamm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GEAMG1_0690 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
AAA_11
RecD_N
UvrD_C_2
Viral_helicase1
Helicase_RecD
UvrD-helicase
SH3_13
AAA_22
SLFN-g3_helicase
PhoH
TraI_hel_assoc_N
nSTAND3
DUF6668
DUF2017
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAH2030502
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All DBs
Position
GEAMG1:complement(745863..747668)
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AA seq
601 aa
AA seq
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MMSLPDVAPLDRQFGAFISRLAGSDASPLLEALAALTAAALRSGHVCLDLVPLAGDGLRL
AGETIPVPSLEEVTVLLHGTAVVGAPGEYRPLILDRGGRLYLYRYHRYERQLADDLLALA
GSAAQPPDADRLAEGLERLFPDAGGPQPDRQRQAALTALHRRLSIISGGPGTGKTATVVR
ILALLLEQAADGLPPRIALAAPTGKAAARLRESIRTARETLPCDERIRQLIPDRAVTLHR
LLGTRPGSVRFRHCRDNPLPSDVVIVDEASMVSLPLMAKLTAALKPGARLILLGDRDQLA
SVEAGAVLGDICAGGDGSAAAGEPSPLARTITVLTRTYRFREGGGIGALAAAMNAGDGRR
ALAVLDGEQESVALRELPAPGELKRELRQSVIDGFRPYLTAPTPEEALARFADFRLLTPL
RQGTLGVEGLNRLVEELLTDEGLIRPLGRWYAGRPVLVTVNAPALHLFNGDIGIAWPDPA
AAGQLRVCFVDPDGGSRWLAPARLPDHETAFALTVHKSQGSEFSRLLLLLPRQDSALLTR
ELLYTAVTRARERVELWGDRELLHAAISRRIERNSGLREALWPCCPVDPPIVPLAFPAKL
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgctgcctgacgtggctccccttgaccgacagtttggcgcgttcatcagccgc
ctcgccggcagcgacgcttccccgctgctggaggctctggccgccttgaccgccgccgcg
ttgcgcagcggccacgtctgccttgacctggttcccctggcgggtgacggcctgcgactg
gcgggggagacgatccccgtcccctccctggaagaggtaaccgttctgctgcacggcact
gccgtggtgggtgcacccggcgagtacagaccgctgatcctggaccggggcggtcgcctc
tacctctaccgctaccaccgctatgagcggcagttggccgacgaccttctggccctggcc
ggcagcgccgcacaaccgccggacgcagaccggctggccgaggggctggagcggctcttt
cctgacgccggcgggccgcagccggatcgccagcgtcaggcggccctgacggcactgcac
cggcggctcagcatcatctccggcgggccgggcaccggcaagaccgccaccgtggtcaga
atactggccctgctgctggagcaggcagccgacgggctgccgccgcgtatcgccttggct
gcccccaccggcaaggccgccgcccggttgcgggaatcgatccgcaccgcccgggaaacc
ctcccctgcgacgagcgaatccggcagctgattccggaccgggcggtcaccctgcaccgc
ctgctgggcacccggcccggatcggtgcggttccgccactgccgagacaatccccttccc
agtgacgtcgtcatcgtcgatgaagcctccatggtatcgctgccgctgatggccaaactg
accgcagcgctcaaaccgggggcacggctgattttgctgggggaccgggatcagctggcc
tcggtggaggcgggagcggtactgggagatatctgtgccggcggagacggcagcgcagca
gcaggggaaccgtcacccctcgcccgcactatcaccgtactgacccggacctaccgcttc
agggaaggggggggcatcggcgccctggctgcagcgatgaacgccggtgacggtcggcgc
gccctggcggtgctggatggagaacaggagagtgtcgccctgcgggagctgcccgctccg
ggggaactgaaacgggaactgcggcagagtgtcattgatgggtttcgcccgtacctgacg
gcaccgacaccggaggaggccctggctcgttttgccgatttccggctgctgacgccgctg
cgccagggaacgctgggcgtggaggggctgaaccgcctggtggaagagctgctgacggac
gaggggctgatccggccactgggccgctggtacgccggccggccggtactggtcacggtc
aacgccccggccttgcacctgttcaacggcgacatcggcatcgcctggcccgatccggca
gcagcgggacagctgcgggtctgcttcgtcgatccggacggaggaagcaggtggctggcc
ccggcccggttgccggaccatgaaaccgcctttgccctcaccgtgcacaagagtcagggg
tcggagttctcgcgcctgctgctgctgctcccccgccaggacagcgccctgctgacccgc
gaactgctctacaccgccgtcacccgggccagggagcgcgtggaactctggggagaccgg
gaactgctgcacgctgccatttcccggcggatcgagcggaattccgggctgcgggaggcg
ctgtggccgtgctgcccggttgatcccccgatcgtcccgctggcattcccggcaaaattg
agctag
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