Trichlorobacter ammonificans: GEAMG1_0758
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Entry
GEAMG1_0758 CDS
T09459
Symbol
rpoC
Name
(GenBank) RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tamm
Trichlorobacter ammonificans
Pathway
tamm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GEAMG1_0758 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tamm03021
]
GEAMG1_0758 (rpoC)
03400 DNA repair and recombination proteins [BR:
tamm03400
]
GEAMG1_0758 (rpoC)
Enzymes [BR:
tamm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GEAMG1_0758 (rpoC)
Transcription machinery [BR:
tamm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GEAMG1_0758 (rpoC)
DNA repair and recombination proteins [BR:
tamm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GEAMG1_0758 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
TyeA
Motif
Other DBs
NCBI-ProteinID:
CAH2030571
UniProt:
A0ABM9D5Q6
LinkDB
All DBs
Position
GEAMG1:826372..830526
Genome browser
AA seq
1384 aa
AA seq
DB search
MEEHFNFFDKPKDPLHFSAIRISISSPEKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDITLKDLERVLYFEAFVITEPGATPLKFGEVLSEDKFLKAKEEYGEDAFEGG
MGAEAIRDCLKSLELDELSTQLRTEMLEATSEAKRKKTAKRLKVVEAFKQSGNRPEWMIL
ECIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLCELQAPEVIIRNEKRML
QEAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYNKLEERGYVTTIKSAKKMVEKERPEVWDVLEEVIKEH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQVE
TRVLMMSTNNILSPANGKPIIVPSQDMVLGTYYMTRERVGALGEDKVFASPEEVRIAFDH
GAVDMQARIKVRVKDVEGDPNEQPKLTDTTVGRIVLREVLPPQVPFSAINKVMNKKELSN
LIDVCYRLAGNKETVILADRLKETGFRYANLAGISICIDDMVVPEGKQAIIEKANEEVQE
IQNQYTEGLITDGERYNKVIDIWAKATEEIAKEMLGNLSRETVLDRDGKEVEISSFNAIH
MMADSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIITEDDCGTLDGLIVTSLTEGGEVIEHVGDRILGRT
ALDDVLDPVTGEVLVTANQEIDETLVRRIEDAGLERVKIRSVLTCQSKRGICAKCYGRDL
ARGHIVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRAAEQTSLEARYDGVMKYINL
NTVKNAEGFHIVMNRNGEIAVHDETGRERERYGVVYGAKLKIADGGVVKSSDVLAEWDPY
TMPILTEVSGRVKFGDIIESLTMEEKLDEVTGLSRKEIIETKDTDKRPRIAIKDTGEGGG
TIGRYFLPVGALINVAEDTVVSAGDVIAKIPRETTKTKDITGGLPRVAELFEARRPKDFA
VITEIDGKVNFGKDSKGKRKVIVTPELGEPKEYLIPKGKHISVHEGDYVRAGEPLMDGSS
NPHDILRVLGVKELAKYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRVKDVGDTNLL
IDDQVERWVFEEENTKAFEAGKRPAIAEPLLLGITKASLSTESFISAASFQETTKVLTQA
AIEGKVDFLRGLKENVIMGRLIPAGTGLARYRHLRLQAAEAAAVIDTVEKAVEEAAEEQL
EQAA
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaacatttcaacttcttcgataaaccgaaagatccgctgcacttttccgccatc
aggatttccatttcctctcccgagaaaatccgggagcgctcattcggcgaggtgaaaaag
ccggaaaccatcaactaccgtaccttcaagccggaacgcgatggtctcttctgcgcaaaa
atctttggtcccaccaaggactacgagtgcaactgcggcaagtacaagcggatgaagcat
cgcggcattgtctgcgaaaagtgcggcgtcgaagtgattccctcaaaggttcgtcgggag
cgtctcggtcacattgacctggctaccccggttgcccatatctggttcctcaagtcgctt
ccttcacggatcggcaacttgctggacatcacgctcaaggacctggagcgggtcctctac
ttcgaagcatttgtcatcaccgagccgggtgcgacgccgctcaaattcggcgaagtgctg
tccgaggacaagtttctcaaggccaaggaagagtacggcgaggatgccttcgaggggggg
atgggggctgaggctattcgggactgcctgaagtcactggagctcgacgagctgagtacc
cagctccgtaccgagatgctggaagcaaccagtgaggcgaagcgaaaaaagaccgccaag
cggttgaaggtggtggaagcgttcaagcagtccggcaaccgtcccgagtggatgatcctg
gagtgcatcccggtgttgccgccggagctgcgccccctggtaccgctggatggcggccgc
tttgccacttccgacctgaacgatctctaccggcgggtgatcaaccgtaacaatcgcctg
aagcgcttgtgcgagctgcaagcccccgaggtgatcatccggaacgaaaagcggatgctg
caggaggcggtggacgccctgttcgacaacggacgccgggggcgggccattgccggtccc
aacaagcggccgctcaagtcactgtccgacatgctcaagggcaagtccggccgtttccgc
cagaacctgctgggtaagcgggttgactactcgggccgttccgttatcgtcgtcggcccg
gagttgaagctgcaccagtgcggcctgccgaagaagatggccctggagctgttcaagccg
ttcatctacaacaagctggaggagcgtggctacgttaccaccatcaagagcgccaagaag
atggtggaaaaagagcgcccggaagtatgggacgtgctggaagaggtgatcaaggagcac
ccggtcatgctgaaccgtgctccgaccctgcaccgtctcggtatccaggcttttgagccg
gttctgatcgaaggcaaagcgatccaactgcatccgctggtgtgtaccgctttcaacgcc
gacttcgacggtgaccagatggcggtgcacctgccgctgtccatcgaaagccaggtggag
acccgggtactgatgatgtccaccaacaacatcctgtcccctgccaacggcaagccgatc
atcgtcccatcccaggacatggtgctcggaacctactacatgacccgcgagcgggtcggc
gccctgggtgaggacaaggtgttcgcctctcccgaagaggtgcggatcgcctttgaccac
ggtgccgtggatatgcaggcccgtatcaaggtgcgggtgaaggatgtggagggtgacccc
aacgaacagccgaagttgaccgacaccaccgtcggccggattgttctgcgtgaggtgctg
ccgccccaggtgccgttcagcgccatcaacaaggtgatgaacaagaaagagctgtcgaac
ctgatcgatgtctgctaccggcttgccggtaacaaggaaaccgtcatcctggccgaccgt
ctgaaggaaaccggtttccgttacgccaacctggccggtatctccatctgcatcgacgac
atggtcgtcccggaagggaagcaggcgatcatcgaaaaggccaacgaagaggttcaggaa
attcagaaccagtacaccgagggtctgatcacggacggcgagcgctacaacaaggtcatc
gacatctgggccaaggcgacggaagagatcgccaaggagatgctcggcaacctgtcccgc
gaaaccgttctggaccgcgacggcaaggaggtggaaatctcctccttcaacgccattcac
atgatggccgactccggtgcccggggctcggcgcagcagattcgtcagttggccggaatg
cggggcctgatggccaagccgtccggtgagatcatcgagacgccgattacggcgaacttc
cgggaaggtctgacggtgctgcagtacttcatctccacccacggtgcccgtaaaggtctg
gccgataccgcgctcaagaccgccaactccgggtacctgacccgtcgtctggtggacgtt
gcccaggacgcgattatcaccgaggacgactgcggtaccctcgacgggctgatcgtcacc
tccctgacggaaggtggcgaggtgatcgagcatgtcggcgaccggattctggggcggacc
gctctggacgatgtcctcgatccggtgaccggtgaagtgctggtgaccgccaaccaggag
atcgatgaaactctggtcagaagaattgaagatgccggtctggagcgggtcaagatccgt
tccgtgcttacctgccagagtaagcgcggtatctgcgcgaagtgctacggacgggatctt
gcccgcggccatatcgtcaatctgggcgaggcggtcggcgtcattgcggcacagtccatc
ggcgagcccggtacccagctgaccatgcgtaccttccacatcggtggtaccgcatctcgg
gccgccgagcagacctctctggaagcacgctacgacggtgtgatgaagtacatcaacctg
aacaccgtgaagaacgcagaagggttccacattgtcatgaaccggaacggcgagattgcc
gtccacgacgaaaccggtcgcgagcgcgaacgatacggcgtggtctacggtgcaaaactg
aagatcgccgatggtggtgtggtcaagagcagcgatgtccttgccgagtgggacccctac
accatgccgatcctcaccgaggtgtccggtcgggtcaagttcggcgacatcatcgagtcc
cttaccatggaagagaagctcgacgaggttaccggtctgtcccgcaaggagatcatcgaa
accaaagacaccgacaagcggccccgcatcgccatcaaggatactggcgagggaggcggc
actatcggccgctacttcctgccggtaggcgccctgatcaacgttgccgaagataccgtt
gtcagcgccggtgacgttattgccaagattccgcgcgaaaccaccaagaccaaggacatc
accggcggtctgccccgggttgccgaactgttcgaagcgcgtcgtcccaaggattttgca
gttatcaccgagatcgacggcaaggtcaacttcggcaaggactcaaagggcaagcggaaa
gtgatcgtcactccggagctaggcgaaccgaaggaatatctgattcccaagggcaagcat
atcagtgtccatgaaggagattatgtccgcgctggcgaaccgttgatggatggttcgtcc
aacccccacgacattctccgggtgctgggggtcaaggagctggccaagtacctggtggac
gaggtgcaggaagtctatcgactgcagggcgttaagatcaacgacaagcatatcgaagtc
attgtccgccagatgctgcgtcgggtcagggtcaaggatgtcggcgataccaacctcttg
atcgacgaccaagttgaacgctgggtctttgaggaggaaaacaccaaggcgtttgaggcg
ggcaagcgtccggccattgccgagccgctcctgctgggcatcaccaaggcgtcactctcc
acggagtcgtttatttcggcggcatcgttccaggaaacaaccaaggtgctgacccaggcc
gccattgaagggaaagtcgacttcctgagaggcctgaaggaaaacgttatcatgggccgg
ctcattcccgccggcactggcctagcgcgctaccgtcacctgcggctgcaggctgcagaa
gccgctgcagtcattgataccgttgaaaaagcagtcgaggaggctgctgaagagcagttg
gagcaggcagcctga
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integrated database retrieval system
